From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 24-APR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hungary19A-6
  • locus tag: SPH_RS06265 [old locus tag: SPH_1294 ]
  • pan locus tag?: PNEUPAN002415000
  • symbol: dhaQ
  • pan gene symbol?: dhaK2
  • synonym:
  • product: DhaKLM operon coactivator DhaQ

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPH_RS06265 [old locus tag: SPH_1294 ]
  • symbol: dhaQ
  • product: DhaKLM operon coactivator DhaQ
  • replicon: chromosome
  • strand: +
  • coordinates: 1200325..1201314
  • length: 990
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_010380 (1200325..1201314) NCBI
  • BioCyc: SPH_RS06265 BioCyc
  • MicrobesOnline: see SPH_1294
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGACATTTATTTCAAATCATAAACAGAAAATTATTTCAAGTTACATTTCGGCAACTGTC
    AGCAGTCATCCTGAATTAGAAAAACACCCAACCTTACCTTTAGTCTATCAAAAAAATCGC
    AATCCTCATCAGGTTCCAATATTGTCGGGTGGAGGTTCAGGTCACGAACCTGCTCATATT
    GGATATGTGGGAGAAGGAATGCTTACTGCTGCTATCTATGGCCAATTATTTACTCCTCCC
    ACAAGAACTGAAATCTTAGAGTCCATTCGTTTTTTAAACAATGGTCACGGTGTCTTCATC
    ATTGTAAAAAATTTCGAAGCAGACATCAAAGAATTTAGCTCGGCCATTAACACTGCTAGA
    AAAGAAGGAATTAAAGTTGGCTATAGTCTAGCACACGACGATATTTCAATTGAACCTCAC
    AATAGATTTCAAATTAGAGGAAGAGGGCTTGCAGGGACTATTTTACTTCATAAAGTCCTA
    GGATATGCAGCTCAGAATGGTGCCGACATCGAGCAACTAACTGATTTAGGTCATCAGCTT
    GCTCCCGAAATCGCAACAATTGGCTTTGCAACGAAATCTGCTAGTCTCCCCCAAGCCGCC
    CTTCCACTATTTAACTTGGAAGAAGGAAATATTTCTTATGGTATTGGGATACATGGCGAA
    GAAGGTTATCGTATCGTCCCATTCCAATCATCGGAAATCCTTGCAAATGAAATTATAAGT
    AAATTAAGATTGCACTATCATTGGAAAAAGGGTGATCAATTTATATTGCTTGTAAATAAT
    CTAGGCACTACCAGCAACCTAGAAATGGGGATATTTATCAATGATCTTCTTCAACTCTTA
    GAAATTGAAGGAGTCACTATTACCTTTATAAAATCAGGAACATTTATGACCAGTTTGGAT
    ATGGCAGGTATATCCGTAACTCTTTGCCCTGTAAAAAATAAGCAGTGGCTAGAAGCGCTC
    AATGCTCCAACGACAGCTTTTGCATGGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    990

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPH_RS06265 [old locus tag: SPH_1294 ]
  • symbol: DhaQ
  • description: DhaKLM operon coactivator DhaQ
  • length: 329
  • theoretical pI: 6.75827
  • theoretical MW: 36079.1
  • GRAVY: -0.00729483

⊟Function[edit | edit source]

  • TIGRFAM:
    probable dihydroxyacetone kinase DhaK1b subunit (TIGR02362; HMM-score: 487.4)
    and 2 more
    dihydroxyacetone kinase, DhaK subunit (TIGR02363; EC 2.7.1.-; HMM-score: 314.6)
    dihydroxyacetone kinase (TIGR02361; EC 2.7.1.29; HMM-score: 262.6)
  • TheSEED: see SPH_1294
  • PFAM:
    EDD (CL0245) Dak1; Dak1 domain (PF02733; HMM-score: 299.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9972
    • Cytoplasmic Membrane Score: 0.0008
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0019
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.041249
    • TAT(Tat/SPI): 0.002757
    • LIPO(Sec/SPII): 0.011287
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTFISNHKQKIISSYISATVSSHPELEKHPTLPLVYQKNRNPHQVPILSGGGSGHEPAHIGYVGEGMLTAAIYGQLFTPPTRTEILESIRFLNNGHGVFIIVKNFEADIKEFSSAINTARKEGIKVGYSLAHDDISIEPHNRFQIRGRGLAGTILLHKVLGYAAQNGADIEQLTDLGHQLAPEIATIGFATKSASLPQAALPLFNLEEGNISYGIGIHGEEGYRIVPFQSSEILANEIISKLRLHYHWKKGDQFILLVNNLGTTSNLEMGIFINDLLQLLEIEGVTITFIKSGTFMTSLDMAGISVTLCPVKNKQWLEALNAPTTAFAW

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPH_RS06265&oldid=9863"