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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae JJA
- locus tag: SPJ_0188 [new locus tag: SPJ_RS00945 ]
- pan locus tag?: PNEUPAN000884000
- symbol: SPJ_0188
- pan gene symbol?: —
- synonym:
- product: mn2+ and fe2+ transporter of the nramp family
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPJ_0188 [new locus tag: SPJ_RS00945 ]
- symbol: SPJ_0188
- product: mn2+ and fe2+ transporter of the nramp family
- replicon: chromosome
- strand: -
- coordinates: 170752..172014
- length: 1263
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000919 (170752..172014) NCBI
- BioCyc: see SPJ_RS00945
- MicrobesOnline: 7478468 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0161 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
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541
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961
1021
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1141
1201
1261ATGTCGCAAGCTATTTCCTTAAATCAATCAACCTGGGCAAGCAAGCTAAAAGCAATGGGA
CCTGGAATCCTAATGGCAACTGCCGCTGTTGGAGGTTCCCACATTGTATCCTCAACTCAA
GCTGGCGGTTCTTACGGTTGGTCTCTACTTCTCTTGGTCATCTTAGCCAATGTCTTTAAA
TATCCATTTTTCCGTTTTGGTGCTGAATACACAGCTGATACTGGAAAGACTTTGGTTGAA
GGTTATGCCGAAAAAGGAAAACTCTATCTCTGGATTTTCTTTATCCTCAATGTCTTTTCG
GCTATGGTCAACACGGCTGGTGTTGCCATTCTGTGCTCAGCTATCATCGCCAGTGCCTTC
CCAATGATTGGACTTAGTATTACTCAGTGGTCCCTCATTCTCGTTGCAATCATTTGGGCT
ATGCTACTCTTTGGAGGCTACAAACTTTTAGACGGCATGGTCAAATGGATTATGTCTGCC
TTAACCATTGCGACTGTTCTTGCAGTTATCATTGCGGCGGTCAAGCATCCAGAATACAGT
TCTGATTTTGTCGAGAAGACACCTTGGCAAATGGCAGCTCTGCCCTTCATCGTCTCCCTC
CTAGGATGGATGCCGGCTCCTATTGAAATTTCAGCCATCAATTCACTTTGGTCAGCTGAA
AAGAGAAAGACCGTCAACTTTAACACAGAAGACGCTCTGTTTGACTTTAACACTGGTTAT
ATTGGAACAGCTATCCTAGCCGTCTTCTTTGTGGCACTGGGAGCACTGATTCAGTATCCT
ACAGGGCAGGCGGTTGAAGCTGCTTCAGCCAAATACATCTCTCAATTCGTGGGCATGTAT
GCCTCTGTTCTTGGCGAATGGTCCCGTTACTTGATTACCTTTATTGCCTTCCTCTGTATC
TTTGGAACAGTTATAACTGTTATCGATGGCTATTCTCGCGTTAATCAGGAATCTCTCCGA
CTGCTAATCAGTCAAAAAGAGGACAATCGTAAATCTTTGAACATCTGGATGACCATCACT
GCTATCATCGGTATCGTCATTATCAAGTTCTTCGCTGGTCAGGTTTCAACCATGCTCCGC
TTTGCCATGATTGGATCTTTCCTGACAACACCTTTCTTTGCTCTTTTGAATTACGCCTTG
GTAACACGTGAAAACAAAAATCTTCCTTCTTGGCTCAAACACCTTGCCATTGCGGGATTG
ATTTTCCTCTTTGGCTTCGCCATCTTCTTTATCTACGCACTCGCAATCGGAAAAGCAGGG
TAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPJ_0188 [new locus tag: SPJ_RS00945 ]
- symbol: SPJ_0188
- description: mn2+ and fe2+ transporter of the nramp family
- length: 420
- theoretical pI: 9.54404
- theoretical MW: 45926.1
- GRAVY: 0.779762
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Cations and iron carrying compounds metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family (TIGR01197; HMM-score: 21.9)
- TheSEED :
- Mn2+ and Fe2+ transporters of the NRAMP family
- PFAM: APC (CL0062) Nramp; Natural resistance-associated macrophage protein (PF01566; HMM-score: 39.1)and 3 moreAA_permease_2; Amino acid permease (PF13520; HMM-score: 20.2)no clan defined Wzz; Chain length determinant protein (PF02706; HMM-score: 12.7)YobH; YobH-like protein (PF13996; HMM-score: 10.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 11
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.079229
- TAT(Tat/SPI): 0.024126
- LIPO(Sec/SPII): 0.0715
- predicted transmembrane helices (TMHMM): 11
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSQAISLNQSTWASKLKAMGPGILMATAAVGGSHIVSSTQAGGSYGWSLLLLVILANVFKYPFFRFGAEYTADTGKTLVEGYAEKGKLYLWIFFILNVFSAMVNTAGVAILCSAIIASAFPMIGLSITQWSLILVAIIWAMLLFGGYKLLDGMVKWIMSALTIATVLAVIIAAVKHPEYSSDFVEKTPWQMAALPFIVSLLGWMPAPIEISAINSLWSAEKRKTVNFNTEDALFDFNTGYIGTAILAVFFVALGALIQYPTGQAVEAASAKYISQFVGMYASVLGEWSRYLITFIAFLCIFGTVITVIDGYSRVNQESLRLLISQKEDNRKSLNIWMTITAIIGIVIIKFFAGQVSTMLRFAMIGSFLTTPFFALLNYALVTRENKNLPSWLKHLAIAGLIFLFGFAIFFIYALAIGKAG
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator: CodY (activation (repression)) regulon
CodY (TF) important in Amino acid metabolism; RegPrecise
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0161 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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