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serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_0544 [new locus tag: SPJ_RS02735 ]
  • pan locus tag?: PNEUPAN001486000
  • symbol: SPJ_0544
  • pan gene symbol?: mshD_1
  • synonym:
  • product: acetyltransferase, gnat family

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_0544 [new locus tag: SPJ_RS02735 ]
  • symbol: SPJ_0544
  • product: acetyltransferase, gnat family
  • replicon: chromosome
  • strand: +
  • coordinates: 520394..521278
  • length: 885
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGATTCAAGCAAGAAACAAGTTAAGCCAAGAGGAGCTATCTGAGGCGAAAAAAGTAATT
    AACTGTTGCCAAAACTATGACGGTACCTATCGCGATCCCTATCTCTCTAACATGCTTAAT
    TTTGACCCAAACATGCCCGCCTTTTTCCTTTATTATGAAAAAGGCAAACTTGTTGGTTTA
    TTAACTGTCTATGCAGATGACCAAGATGTAGAAGTGACGATATTGGTTCATCCAGGTCAT
    CGCCGTCAGGGGATTGCGCGTGCATTGTTTACTAGTTTTGAGAGAGAAACAGCTTCTTTC
    CCCATTCGGTCAGTCACTTTTCAGACAGAACGTATTTTTTTAGAGAATCATCCTGACTTT
    GCCAGTAACTGGGGACTAATCGAGGATGAAGAGACAGAAACTTGGTTAGGTAAGGATAGA
    AGACCTTATCCGTTAGCAAATGTTTCCCATCTTGAAGTTTTGTTAGCAGATAGTTCGTAT
    CAGGATCAAATTAGTCAATTAAAATTTCAGGCATTTTCAGAGGAACATGAATCGAGAGAA
    GTTGTGGATAGATATGTCGCTGAAGCTCTGAAGGATCCAGAAAGTCGCTTATATATTTTG
    TTAAAAGACGGTCAGGTTATTGGGACTTGCACGGTAGATTTATCGACTAATACGAATTAC
    TTCTACGGTTTAGCAATATCGGAACCTGAACGTGGGAAAGGCTATGGAAGCTACTTAGCA
    AAATCCCTCGTCAACCAACTAATTGAGCAAAATGACAAGGAATTTCAGATTGCAGTGGAA
    GATAGCAATGTAGGTGCCAAACGTTTGTATGAAAAAATTGGCTTTGTCAAACAGACACAG
    GTGGTTTATCTGAATGAGAAAGGAGCAAGGGATTCCGAAGTGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    885

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_0544 [new locus tag: SPJ_RS02735 ]
  • symbol: SPJ_0544
  • description: acetyltransferase, gnat family
  • length: 294
  • theoretical pI: 4.64316
  • theoretical MW: 33716.5
  • GRAVY: -0.491497

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal-protein-alanine acetyltransferase (TIGR01575; EC 2.3.1.128; HMM-score: 63.4)
    and 5 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Glutathione and analogs mycothiol synthase (TIGR03448; EC 2.3.1.189; HMM-score: 44.6)
    UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase (TIGR03585; EC 2.3.1.202; HMM-score: 26.1)
    GNAT-family acetyltransferase TIGR03103 (TIGR03103; HMM-score: 20.6)
    Cellular processes Cellular processes Toxin production and resistance aminoglycoside N(6')-acetyltransferase, AacA4 family (TIGR04431; EC 2.3.1.82; HMM-score: 19.9)
    Cellular processes Cellular processes Adaptations to atypical conditions diaminobutyrate acetyltransferase (TIGR02406; EC 2.3.1.178; HMM-score: 18.5)
  • TheSEED  :
    • Acetyltransferase, GNAT family
  • PFAM:
    Acetyltrans (CL0257) Acetyltransf_1; Acetyltransferase (GNAT) family (PF00583; HMM-score: 86.8)
    Acetyltransf_10; Acetyltransferase (GNAT) domain (PF13673; HMM-score: 75)
    and 12 more
    Acetyltransf_7; Acetyltransferase (GNAT) domain (PF13508; HMM-score: 68.2)
    FR47; FR47-like protein (PF08445; HMM-score: 44.6)
    Acetyltransf_3; Acetyltransferase (GNAT) domain (PF13302; HMM-score: 42.7)
    Acetyltransf_4; Acetyltransferase (GNAT) domain (PF13420; HMM-score: 38.2)
    Acetyltransf_8; Acetyltransferase (GNAT) domain (PF13523; HMM-score: 25.8)
    Acetyltransf_CG; GCN5-related N-acetyl-transferase (PF14542; HMM-score: 25.6)
    Acetyltransf_9; Acetyltransferase (GNAT) domain (PF13527; HMM-score: 21.8)
    Acetyltransf_18; Acetyltransferase (GNAT) domain (PF18014; HMM-score: 18.5)
    GNAT_acetyltran; GNAT acetyltransferase (PF12746; HMM-score: 17.7)
    no clan defined Germane; Sporulation and spore germination (PF10646; HMM-score: 14.4)
    Acetyltrans (CL0257) Acetyltransf_13; ESCO1/2 acetyl-transferase (PF13880; HMM-score: 14)
    Acetyltransf_6; Acetyltransferase (GNAT) domain (PF13480; HMM-score: 13.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9898
    • Cytoplasmic Membrane Score: 0.0018
    • Cell wall & surface Score: 0.0029
    • Extracellular Score: 0.0055
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.015473
    • TAT(Tat/SPI): 0.000378
    • LIPO(Sec/SPII): 0.01817
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIQARNKLSQEELSEAKKVINCCQNYDGTYRDPYLSNMLNFDPNMPAFFLYYEKGKLVGLLTVYADDQDVEVTILVHPGHRRQGIARALFTSFERETASFPIRSVTFQTERIFLENHPDFASNWGLIEDEETETWLGKDRRPYPLANVSHLEVLLADSSYQDQISQLKFQAFSEEHESREVVDRYVAEALKDPESRLYILLKDGQVIGTCTVDLSTNTNYFYGLAISEPERGKGYGSYLAKSLVNQLIEQNDKEFQIAVEDSNVGAKRLYEKIGFVKQTQVVYLNEKGARDSEV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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