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TIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae JJA
- locus tag: SPJ_0677
- pan locus tag?:
- symbol: SPJ_0677
- pan gene symbol?: —
- synonym:
- product: transcriptional regulator, MerR family
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPJ_0677
- symbol: SPJ_0677
- product: transcriptional regulator, MerR family
- replicon: chromosome
- strand: +
- coordinates: 656527..656640
- length: 114
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000919 (656527..656640) NCBI
- BioCyc:
- MicrobesOnline: 7478946 MicrobesOnline
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61TTGGAACGCCTTCAGGTCATTCTTTACTACAAATATCTAGGCTTTTCTTTAGAGAAAATA
GCAGAACTGTTAAAGGAAGAAAGGACAGATTTATTGCTCCATTTGACTAGGTAG60
114
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPJ_0677
- symbol: SPJ_0677
- description: transcriptional regulator, MerR family
- length: 37
- theoretical pI: 7.52847
- theoretical MW: 4539.37
- GRAVY: -0.0459459
⊟Function[edit | edit source]
- TIGRFAM: Regulatory functions DNA interactions Zn(II)-responsive transcriptional regulator (TIGR02043; HMM-score: 17.1)Cellular processes Detoxification Hg(II)-responsive transcriptional regulator (TIGR02051; HMM-score: 14.6)Regulatory functions DNA interactions Hg(II)-responsive transcriptional regulator (TIGR02051; HMM-score: 14.6)
- TheSEED :
- Regulator of the multidrug efflux pump pmrA
- PFAM: HTH (CL0123) MerR-DNA-bind; MerR, DNA binding (PF09278; HMM-score: 29.6)and 2 moreMerR_1; MerR HTH family regulatory protein (PF13411; HMM-score: 15.4)DNA_primase_lrg (CL0242) DNA_primase_lrg; Eukaryotic and archaeal DNA primase, large subunit (PF04104; HMM-score: 13.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.6595
- Cytoplasmic Membrane Score: 0.1196
- Cell wall & surface Score: 0.0006
- Extracellular Score: 0.2204
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.032293
- TAT(Tat/SPI): 0.002133
- LIPO(Sec/SPII): 0.009861
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MERLQVILYYKYLGFSLEKIAELLKEERTDLLLHLTR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]