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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 05-APR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_RS01720 [old locus tag: SPJ_0340 ]
  • pan locus tag?: PNEUPAN001129000
  • symbol: pssD
  • pan gene symbol?: wchJ
  • synonym:
  • product: PssD/Cps14F family polysaccharide biosynthesis glycosyltransferase

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_RS01720 [old locus tag: SPJ_0340 ]
  • symbol: pssD
  • product: PssD/Cps14F family polysaccharide biosynthesis glycosyltransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 317733..318182
  • length: 450
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_012466 (317733..318182) NCBI
  • BioCyc: SPJ_RS01720 BioCyc
  • MicrobesOnline: see SPJ_0340
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAAAGTATGTCTAGTTGGATCTAGTGGAGGTCATTTAACTCATTTGTATTTATTAAAA
    CCTTTCTGGAAAGATAGAGAAAGATTTTGGGTGACTTTTGATAAAGAAGATGCAAGAAGT
    ATTTTAGAAAATGAAATATTTTATCCATGTTATTATCCTACTAATCGTAATCTAAAAAAT
    CTTATTAAAAATACGATTCTTGCTTTCAAAATTTTGAGAAAGGAACGCCCTGATATTATC
    GTCTCATCAGGGGCAGCTGTAGCAGTTCCTTTCTTTTATCTAGGGAAAATATTTGGTGCT
    AAGACAGTCTATATAGAAGTATTTGATAGAATTGATGCTCCGACAATGACTGGGAAACTT
    GTTTATCCAGTAACTGACAGGTTTATTGTACAATGGGAAGAAATGAAAAAAGTATATCCG
    AAAGCAATCAATCTCGGAGGGATTTTCTAA
    60
    120
    180
    240
    300
    360
    420
    450


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_RS01720 [old locus tag: SPJ_0340 ]
  • symbol: PssD
  • description: PssD/Cps14F family polysaccharide biosynthesis glycosyltransferase
  • length: 149
  • theoretical pI: 9.82711
  • theoretical MW: 17305.2
  • GRAVY: 0.00738255

⊟Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase (TIGR01133; EC 2.4.1.227; HMM-score: 12.1)
  • TheSEED: see SPJ_0340
  • PFAM:
    GT-B (CL0113) Alg14; Oligosaccharide biosynthesis protein Alg14 like (PF08660; HMM-score: 58)
    and 1 more
    Glyco_transf_28; Glycosyltransferase family 28 N-terminal domain (PF03033; HMM-score: 12.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0557
    • Cytoplasmic Membrane Score: 0.8455
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0987
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005353
    • TAT(Tat/SPI): 0.000164
    • LIPO(Sec/SPII): 0.001033
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKVCLVGSSGGHLTHLYLLKPFWKDRERFWVTFDKEDARSILENEIFYPCYYPTNRNLKNLIKNTILAFKILRKERPDIIVSSGAAVAVPFFYLGKIFGAKTVYIEVFDRIDAPTMTGKLVYPVTDRFIVQWEEMKKVYPKAINLGGIF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟'lacZ' fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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