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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 20-APR-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_RS07310 [old locus tag: SPJ_1474 ]
  • pan locus tag?: PNEUPAN002952000
  • symbol: SPJ_RS07310
  • pan gene symbol?: engB
  • synonym: yihA
  • product: ribosome biogenesis GTP-binding protein YihA/YsxC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPJ_RS07310 [old locus tag: SPJ_1474 ]
  • symbol: SPJ_RS07310
  • product: ribosome biogenesis GTP-binding protein YihA/YsxC
  • replicon: chromosome
  • strand: -
  • coordinates: 1403729..1404316
  • length: 588
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_012466 (1403729..1404316) NCBI
  • BioCyc: SPJ_RS07310 BioCyc
  • MicrobesOnline: see SPJ_1474
  • PneumoBrowse for strain D39V: SPV_1398 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGGAACTTAATACACACAATGCTGAAATCTTGCTCAGTGCAGCTAATAAGTCCCACTAT
    CCGCAGGATGAACTGCCAGAGATTGCCCTAGCAGGGCGTTCAAATGTTGGTAAATCCAGC
    TTTATCAACACTATGTTGAACCGTAAGAATCTCGCCCGTACATCAGGAAAACCTGGTAAA
    ACCCAGCTCCTGAACTTTTTTAACATTGATGACAAGATGCGCTTTGTGGATGTGCCTGGT
    TATGGCTATGCCCGTGTTTCTAAAAAGGAACGTGAAAAGTGGGGGTGCATGATTGAGGAG
    TACTTAACGACTCGGGAAAATCTCCGTGCGGTTGTCAGTCTAGTTGACCTTCGTCATGCC
    CCGTCAGCAGATGATGTGCAGATGTACGAATTTCTCAAGTATTATGAGATTCCAGTCATC
    ATTGTGGCGACCAAGGCGGACAAGATTCCTCGTGGTAAATGGAACAAGCATGAATCAGCA
    ATCAAAAAGAAATTAAACTTTGACCCGAGTGACGATTTCATCCTCTTTTCATCTGTCAGT
    AAGGCAGGGATGGATGAGGCTTGGGATGCAATCTTAGAAAAATTGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    588

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_RS07310 [old locus tag: SPJ_1474 ]
  • symbol: SPJ_RS07310
  • description: ribosome biogenesis GTP-binding protein YihA/YsxC
  • length: 195
  • theoretical pI: 8.89207
  • theoretical MW: 22229.3
  • GRAVY: -0.458974

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Other ribosome biogenesis GTP-binding protein YsxC (TIGR03598; HMM-score: 244.8)
    and 11 more
    Genetic information processing Protein synthesis Other ribosome-associated GTPase EngA (TIGR03594; HMM-score: 59.4)
    Genetic information processing Protein synthesis Other ribosome biogenesis GTP-binding protein YlqF (TIGR03596; HMM-score: 46.6)
    Unknown function General small GTP-binding protein domain (TIGR00231; HMM-score: 41.3)
    Genetic information processing Protein synthesis Other GTP-binding protein Era (TIGR00436; HMM-score: 40.9)
    Genetic information processing Protein synthesis Other ribosome biogenesis GTPase YqeH (TIGR03597; HMM-score: 35.9)
    Genetic information processing Protein fate Protein modification and repair [FeFe] hydrogenase H-cluster maturation GTPase HydF (TIGR03918; HMM-score: 35.5)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA modification GTPase TrmE (TIGR00450; EC 3.6.-.-; HMM-score: 30.3)
    Genetic information processing Protein synthesis Other Obg family GTPase CgtA (TIGR02729; HMM-score: 21.6)
    Unknown function General GTP-binding protein HflX (TIGR03156; HMM-score: 20.2)
    Genetic information processing Protein synthesis Translation factors ribosome small subunit-dependent GTPase A (TIGR00157; EC 3.6.-.-; HMM-score: 16.9)
    Metabolism Transport and binding proteins Cations and iron carrying compounds ferrous iron transport protein B (TIGR00437; HMM-score: 12.9)
  • TheSEED: see SPJ_1474
  • PFAM:
    P-loop_NTPase (CL0023) MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 75.2)
    and 10 more
    FeoB_N; Ferrous iron transport protein B (PF02421; HMM-score: 30.5)
    Dynamin_N; Dynamin family (PF00350; HMM-score: 24.8)
    RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 23.3)
    GTP_EFTU; Elongation factor Tu GTP binding domain (PF00009; HMM-score: 15.6)
    AIG1; AIG1 family (PF04548; HMM-score: 15.6)
    Septin; Septin (PF00735; HMM-score: 13.5)
    HTH (CL0123) ESCRT-II; ESCRT-II complex subunit (PF05871; HMM-score: 13.3)
    P-loop_NTPase (CL0023) SRPRB; Signal recognition particle receptor beta subunit (PF09439; HMM-score: 12.9)
    Roc; Ras of Complex, Roc, domain of DAPkinase (PF08477; HMM-score: 12.5)
    TniB; Bacterial TniB protein (PF05621; HMM-score: 11.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010766
    • TAT(Tat/SPI): 0.001711
    • LIPO(Sec/SPII): 0.005011
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MELNTHNAEILLSAANKSHYPQDELPEIALAGRSNVGKSSFINTMLNRKNLARTSGKPGKTQLLNFFNIDDKMRFVDVPGYGYARVSKKEREKWGCMIEEYLTTRENLRAVVSLVDLRHAPSADDVQMYEFLKYYEIPVIIVATKADKIPRGKWNKHESAIKKKLNFDPSDDFILFSSVSKAGMDEAWDAILEKL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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