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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 20-APR-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae JJA
  • locus tag: SPJ_RS12875 [old locus tag: SPJ_1850 ]
  • pan locus tag?: PNEUPAN000429000
  • symbol: SPJ_RS12875
  • pan gene symbol?: —
  • synonym:
  • product: tail fiber domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS, pseudogene
  • locus tag: SPJ_RS12875 [old locus tag: SPJ_1850 ]
  • symbol: SPJ_RS12875
  • product: tail fiber domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1748057..>1752079
  • length: 4023
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_012466 (1748057..>1752079) NCBI
  • BioCyc: SPJ_RS12875 BioCyc
  • MicrobesOnline: see SPJ_1850
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    GAAGACCAAGAAGACCGTGTCTCAGTAGTCGAATCCAACTTTAAGCAGCGTGCTGATTCA
    CTCGACGCTGGTGTAAGCCGTCTGACTGAAGGGCTTAGAACTAAAGCCGATATCAGCTCA
    CTCAATGTGACTGCTGAAAATATCCGGCAATCTGTGAAGAGCCTTGAGACAGACACGCAG
    AACAAGCTAAATCAGAAGTTGAGTCAGGCTGAATTTGAGGTGCGAGCTGGCTCTATCCGT
    CAGGAAATCCTGAACGCAACCAAGGATAAAGCCAGCAAGTCAGAACTCACGCAGACAGCT
    GAGGAGCTCTCTAGTAAGATAGCGAGTGTGCAGGTCGGAGGTAGGAATTATATCAGAAAT
    GGTCAATTTAAGAACGGTTCGAAAAACTGGCTTGAATATCAATCTGTTAATTTTGGTTTG
    AATTTCAACTATCAACACTCTCAAAATCCTAATAATCGAAATCGTCCAGGACTACACTTC
    TATCACGATTCTCAAGATGTTGCTAATTTTTTTGGAATTCAGCAATCTTTTGCATTTGAT
    GGTATTCGAGGGGAAAAGGTGAGTGTATCTCTTCTTGTTTCAAAGGATGGCAGTGATAGC
    TACAGCGGTTTGAAAGTTGCATTGCACTACATCAAAAACAAAAACATTATTGGGCAAGAG
    TGGCAAAATATCCCAAGTCCACAAATAACATCGAAGTATAAGCGTTTCACATTTACGTTT
    ACTTTATCAGACGATGTAGAGAATCTGAATTTGATGTTGTTTGGTGAAAAAGGGAAGACC
    ATCAACCTCTATGTTACAGATGTTCAACTCGAAAGAGGTTCTGTCGCGACGGACTACAAA
    GAAGCTCCTGAAGATATAGAAGGTCAGATTTCAACAGTTGAATCCAACTTTAAACAGCGT
    GCTGATTCACTCGAAGCTGGTGTGAATCGTCTGACTGAAGGGCTTAGAACCAAAGTGGAT
    ATCAGCGCACTCAACGTGACTGCTGAAAATATCCGGCAATCTGTGAAGAGCCTTGAGACA
    GACACGCAGAACAAGCTAAATCAGAAGTTGAGTCAGGCTGAATTTGAGGTGCGAGCTGGC
    TCTATCCGTCAGGAAATCCTGAACGCAACCAAGGATAAAGCAGATAAGACTTTAGTTGTA
    TCTGAAGCTGGGAAATTGCGTGAAGAATTTTCAAAAATGAAGGTGGGAGGACGGAATCTA
    TGGATAAAATCCAAGACGGTTGGAGCTGTAATTGAAAAATTACCTGAAAACCACGTCACA
    GGTCAAAAAGAATGCTATAGGCTAGAGAACAACTCTACTTTAACGTTCAACATTGAACCA
    GATTTCAGCTCAAGGTTGTATCAAAAAGTTACTTTTAGCGCTTGGGTCAAGTACGAAAAT
    GTAGTCCAAGGTCGAAATTTTTGGAATGTATTTAATTGCTTCAAACATTATCTTTTTAGA
    AAAAATAGTGAGACCGGAGTACAGAGTGGTCCAGATTATGCTACGCTTGGTATGTATAAA
    GGTTCGGCAGATTGGAAATATATTACATTCACTTATGACTACTCTGAAAAAACAAATTTT
    GATCAATTGAAGACATCATTGCGATTCAATCTTGAAGGTGCTACAAGCGGTACAGCTTGG
    GTAACAGGAATCAAGGTTGAAATCGGTAGTGTGGCGACGGACTGGAGTCCTGCGCCTGAG
    GACGCTGATGGTCTCATCACTGAAGCTAAGGCTACCTTTGAGCGGACAGCTCAGGGCTTG
    CGAACCGATTTATCAGCTATTCAGGAATATGTAAATAAAGACGGTCAGCGACAGGAAGCC
    CTACAGCGCTATACTCGTGAGGAGAGCACGAGACAAGCGATAGCAGTCCGTGAGCTGGTC
    AATCGTGATTTCGTTGGTAAGGCTACTTATCAAGAAGATGTTAAGGGTATCAATCAGAGG
    ATTGAAGCTGTTAAAACTAGTGCGAATAAAGACATCGCTAGTCAAATCGCTAGCTATCGC
    CAATCTGTAGATGGTAAGTTCACGGATATTTCAAGTCAGATAACTACTTATAAGCAAGAT
    GTGGGCGGTCAAATCAGTGGTCTATCAAATAGACTTACAAGCAGTGAGCAAGGAACCACT
    ACTCAGATTTCAAATCTTTCAAATCGGATAAACAGTAATAAACAAGGCACAGATAATCAG
    ATTTCAAATTTAAAGACTCAGGTCGCTACAAACAAGGATAATGCTGAACGACAAATGGGT
    AGAATATCTAATCAGGTTTCTGCAAACAAAGCGAATGCTGATAGTCAATTTGCGAATGTG
    ACCAATCAACTAGCGCGAAAAGTAGAGACTACTGACTTTCAGCGTGTTAAGGAAACCAGT
    AAACTTTACGAGCGGATTTTGGGAAATACTGAAAATGGAATTGCGGATAAGGTTGCTCGC
    ATGGCTCTGACCAATCAACTGTTTCAGGTTGAGGTGGCTAAAAATGCCAGCAATGGTCAA
    AATTTGTTGAAAGGCACAAAAGACTTCTCAGGGGGTTGGAAAAACAAGGGTGCAAATTGG
    AAAAAGCACGCTGAAAAATACAAAGGTGTTGATGTCCTATTTAAAAATAATTCGTGGAAT
    GGCGTTGGACAAGAGATTGATGCAAAAATTGGTGAAGTCTATACATTCAGCTTATGGATG
    AAGAGCGACTGGAAGAATGATACAGTAAATTTCTATGTAAATAGAAATGGATCTGTTGAG
    AAAGGTTGGGGTGTTCCATCTGAAACATCGGTCGCTATAACAAGTGAATGGAAACGTTAC
    TCATTTACCTTCAAAATTACTGTGGACGGCTTCATCTTTCCTCGTGTAGAACGACTTAAT
    CAAAATACAAATCTATATATTGCAGGTCTTAAACTTGAAAAAGGATCGTATGCAACACCG
    TACACCGAAGCTCCTGAAGACACGGACGAAGCGATTCGCTCTGTTCAAAGCCAACTAACT
    GGCTCATGGGCAGTTCAAAACATCAACTCGGCTGGAGATATCATCTCTGGAATCAATCTT
    GGCGCCAATGGACATAACCGCTTTGTTGGGAAATTGACCCACATCACTGGAGAGACCCTG
    ATTGACAGAGCAGTCATCAAGTCTGCCATGGTTGATAAGCTCAAAACGGCCAATTTTGAA
    GCTGGTTCGGTCACGACTACGATATTAGACGCTGAAGCGGTAACTGCTGAGAAGTTGAAA
    GTTGACAATGCGCTTATTAAAAAATTAACTGCAACTGATGCTTTTATTTACGAACTGATA
    TCTAAACGTATCTTCTCTACTAAGGTTGAGTCCGTCATTTCTAGCTCAACCTTCCTAGAA
    GCCTATCAAGGCCGAATCGGTGGATTCACACTTGGTCAATTTGACCAGGGTGGCGGTCGC
    TGGATTTCAGGTGTCAATCAGTTCTCTGTTGGTATGGGGAATGGTACCGGGCATGGAGTC
    CGGACAGCCTTCTGGGCGAACTGGGGAAATAATTGGAACTATGCCGGACCTAAAGCATGG
    AACGTCAATACTGATGGGAAAATGTACTGTAGGAATGAAGTCGGTTTTTATGATCAAGTG
    GATTTTTCGAATTCATCGAGAGCAAACTTCTATGGGAATACTACTTTTTCTCGTTCTCCT
    GTGTTTTCAAATGGTATCGAACTTGGAAGTAAAGATGTGCTTGGTGATGGTTGGAATCCC
    AAAGGCGGAAGGAATGCGGTTGTTTGGTGGAATCAGGTCGGTAGCGGTAGCGTGAAGTAT
    TGGATGGAACAAAAATCAGACAGACGCTTAAAAGAGAACATCACAGATACAGCTGTGAAA
    GCCTTGGACAAAATCAACAGATTAAGAATGGTTGCATTTGATTTCATCGAAAATAAGAAA
    CATGAGGAGATTGGTCTAATAGCTCAAGAGGCTGAAACCATCGTTCCAAGAATTGTCTCA
    CGAGATCCTGAGAATCCAGATGGCTATCTGCATATCGACTATACCGCTTTAGTTCCTTAC
    TTAATCAAGGCTATTCAAGAATTAAATCAAAAAATAGAAAAAATGGAGAAAACAATAGCA
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3300
    3360
    3420
    3480
    3540
    3600
    3660
    3720
    3780
    3840
    3900
    3960
    4020
    4023

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPJ_RS12875 [old locus tag: SPJ_1850 ]
  • symbol: SPJ_RS12875
  • description: tail fiber domain-containing protein
  • length:
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

⊟Function[edit | edit source]

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb:
  • SignalP:
  • predicted transmembrane helices (TMHMM):

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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