Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 26-AUG-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPN034183
- locus tag: SPN034183_02750 [new locus tag: SPN034183_RS01490 ]
- pan locus tag?: PNEUPAN000980000
- symbol: SPN034183_02750
- pan gene symbol?: sorC_2
- synonym:
- product: putative sugar-binding regulatory protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN034183_02750 [new locus tag: SPN034183_RS01490 ]
- symbol: SPN034183_02750
- product: putative sugar-binding regulatory protein
- replicon: chromosome
- strand: +
- coordinates: 251149..252129
- length: 981
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FQ312043 (251149..252129) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0231 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961ATGAATCAAGATAGGAATAAACTGCTTTCTAAAATTGCTTATCTGTATTATATTGAAAAC
TTAAATCAGTCACAAATAGCAGCAAAATTAGGAATTTATAGAACCTCTATTAGTAGAATG
TTAACAGAAGCAAGGAATGTAGGAATTGTTAAAATTGAAATAGAGAATTTTGATACCAAT
ATGTTTAAGTTGGAAAATTATGTAAAAGAAAAATACAGTTTGGAAAGTTTAGAAATTATT
CCAAATGAATTTGATGATACTCCAACAATTTTATCTGAAAGAATTTCTCAAGTTGCAGCA
GGCGTCCTTAGGAATCTAATTGATGATAATATGAAAATTGGCTTTTCTTGGGGGAAAAGT
TTAAGTAATTTAGTAGATTTAATTCACAGTAAAAGTGTCCGAAATGTTCACTTCTATCCT
CTAGCAGGTGGTCCTAGTCACATACACGCTAAATACCATGTGAATACACTGATTTATGAA
ATGTCTAGAAAATTTCATGGAGAGTGTACATTTATGAATGCAACGATTGTGCAAGAAAAT
AAATTGTTAGCAGATGGTATTTTGCAATCAAGATATTTTGAAAATTTGAAAAATAGTTGG
AAAGATTTAGATATAGCTGTAGTCGGAATTGGTGATTTTAGCAATAAAGGGAAACATCAA
TGGTTAGACATGCTTACAGAGGATGACTTTAAAGAATTGACCAAAGTTAAAACTGTAGGA
GAAATTTGTTGTCGATTTTTTGATTCAAAAGGTAAAGAAGTCTATGAAAACTTACAGGAA
AGAACGATAGCCATCTCTTTGGAAGATTTAAAAAATATTCCTCAAAGTTTAGCTGTTGCT
TACGGTGATACGAAAGTATCTTCGATTCTTTCTGTCTTGCGTGCTAATTTAGTAAATCAT
TTGATTACAGATAAAAATACAATTTTAAAAGTTTTGGAAGAAGATGGTGATTTGACTTTT
AGAGAGATTCTAGGTGAGTGA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
981
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN034183_02750 [new locus tag: SPN034183_RS01490 ]
- symbol: SPN034183_02750
- description: putative sugar-binding regulatory protein
- length: 326
- theoretical pI: 6.1174
- theoretical MW: 37237.4
- GRAVY: -0.253681
⊟Function[edit | edit source]
- TIGRFAM: RNA polymerase sigma factor, sigma-70 family (TIGR02937; HMM-score: 20.6)RNA polymerase sigma-70 factor, sigma-B/F/G subfamily (TIGR02980; HMM-score: 17.7)and 4 moreMobile and extrachromosomal element functions Other addiction module antidote protein, HigA family (TIGR02607; HMM-score: 13.1)Regulatory functions DNA interactions addiction module antidote protein, HigA family (TIGR02607; HMM-score: 13.1)Regulatory functions Protein interactions addiction module antidote protein, HigA family (TIGR02607; HMM-score: 13.1)Energy metabolism Methanogenesis putative methanogenesis marker protein 14 (TIGR03285; HMM-score: 11.5)
- TheSEED :
- transcriptional regulator, putative
- PFAM: ISOCOT_Fold (CL0246) Sugar-bind; Putative sugar-binding domain (PF04198; HMM-score: 276.2)and 15 moreHTH (CL0123) HTH_24; Winged helix-turn-helix DNA-binding (PF13412; HMM-score: 23)HTH_Crp_2; Crp-like helix-turn-helix domain (PF13545; HMM-score: 19.1)Sigma70_r4; Sigma-70, region 4 (PF04545; HMM-score: 18.3)Cro; Cro (PF09048; HMM-score: 17.5)MarR; MarR family (PF01047; HMM-score: 16.8)MarR_2; MarR family (PF12802; HMM-score: 15.1)HTH_37; Helix-turn-helix domain (PF13744; HMM-score: 14.8)HTH_23; Homeodomain-like domain (PF13384; HMM-score: 14.2)HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 13.3)TrmB; Sugar-specific transcriptional regulator TrmB (PF01978; HMM-score: 13.1)no clan defined SFXNs; Sideroflexins (PF03820; HMM-score: 12.9)Phosphatase (CL0031) NleF_casp_inhib; NleF caspase inhibitor (PF16809; HMM-score: 12.6)HTH (CL0123) HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 12.4)KORA; TrfB plasmid transcriptional repressor (PF16509; HMM-score: 12.2)Sigma70_r4_2; Sigma-70, region 4 (PF08281; HMM-score: 11.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9462
- Cytoplasmic Membrane Score: 0.0312
- Cell wall & surface Score: 0.0003
- Extracellular Score: 0.0224
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003102
- TAT(Tat/SPI): 0.000573
- LIPO(Sec/SPII): 0.00034
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CCP31985 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MNQDRNKLLSKIAYLYYIENLNQSQIAAKLGIYRTSISRMLTEARNVGIVKIEIENFDTNMFKLENYVKEKYSLESLEIIPNEFDDTPTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLITDKNTILKVLEEDGDLTFREILGE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0231 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.