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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 13-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPN034183
  • locus tag: SPN034183_RS09920 [old locus tag: SPN034183_18020 ]
  • pan locus tag?: PNEUPAN003616000
  • symbol: SPN034183_RS09920
  • pan gene symbol?: yidC2
  • synonym:
  • product: membrane protein insertase YidC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN034183_RS09920 [old locus tag: SPN034183_18020 ]
  • symbol: SPN034183_RS09920
  • product: membrane protein insertase YidC
  • replicon: chromosome
  • strand: -
  • coordinates: 1827865..1828695
  • length: 831
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_021028 (1827865..1828695) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1850 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGGGAGTGAAAAAGAAACTAAAGTTGACTAGTTTGCTAGGACTGTCTCTGTTAATCATG
    ACAGCCTGTGCAACTAATGAGGTAACTAGCGATATTACAGCCGAATCGGCTGATTTTTGG
    AGTAAATTGGTTTACTTCTTTGCGGAAATCATTCGCTTTTTATCGTTTGATATTAGTATC
    GGAGTGGGGATTATTCTCTTTACGGTCTTGATTCGTACAGTCCTCTTGCCAGTCTTTCAG
    GTGCAAATGGTGGCTTCTAGGAAAATGCAGGAAGCTCAGCCACGCATTAAGGCGCTTCGA
    GAACAATATCCAGGTCGAGATATGGAAAGCAGAACCAAACTAGAGCAGGAAATGCGTAAA
    GTATTTAAAGAAATGGGTGTCAGACAGTCAGACTCTCTTTGGCCGATTTTGATTCAGATG
    CCGGTTATTTTGGCCCTGTTCCAAGCCCTATCAAGAGTTGACTTTTTAAAGACAGGTCAG
    TTCTTATGGATTAACCTTGGTAGTGTGGATACAACCCTTGTTCTTCCGATTTTAGCAGCA
    GTATTCACCTTTTTAAGTACTTGGTTGTCCAACAAAGCTTTGTCTGAGCGAAATGGAGCT
    ACGACTGCGATGATGTATGGGATTCCAGTCTTGATTTTTATCTTTGCAGTTTATGCGCCA
    GGTGGAGTCGCCCTATACTGGACAGTGTCTAATGCTTATCAAGTCTTGCAAACCTATTTC
    TTGAATAATCCATTCAAGATTATCGCAGAGCGCGAGGCCGTAGTACAGGCACAAAAAGAT
    TTGGAAAATAGAAAAAGAAAAGCCAAGAAAAAGGCTCAGAAAACGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    831

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN034183_RS09920 [old locus tag: SPN034183_18020 ]
  • symbol: SPN034183_RS09920
  • description: membrane protein insertase YidC
  • length: 276
  • theoretical pI: 10.4906
  • theoretical MW: 31275.9
  • GRAVY: 0.254348

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein and peptide secretion and trafficking membrane protein insertase, YidC/Oxa1 family (TIGR03592; HMM-score: 167.6)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    Oxa1 (CL0376) 60KD_IMP; 60Kd inner membrane protein (PF02096; HMM-score: 153.2)
    and 1 more
    Yip1 (CL0112) Yip1; Yip1 domain (PF04893; HMM-score: 10.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • SignalP: Signal peptide LIPO(Sec/SPII) length 22 aa
    • SP(Sec/SPI): 0.002552
    • TAT(Tat/SPI): 0.000115
    • LIPO(Sec/SPII): 0.996702
    • Cleavage Site: CS pos: 22-23. MTA-CA. Pr: 0.9973
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000538317 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MGVKKKLKLTSLLGLSLLIMTACATNEVTSDITAESADFWSKLVYFFAEIIRFLSFDISIGVGIILFTVLIRTVLLPVFQVQMVASRKMQEAQPRIKALREQYPGRDMESRTKLEQEMRKVFKEMGVRQSDSLWPILIQMPVILALFQALSRVDFLKTGQFLWINLGSVDTTLVLPILAAVFTFLSTWLSNKALSERNGATTAMMYGIPVLIFIFAVYAPGGVALYWTVSNAYQVLQTYFLNNPFKIIAEREAVVQAQKDLENRKRKAKKKAQKTK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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