⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 700669
- locus tag: SPN23F00940 [new locus tag: SPN23F_RS00485 ]
- pan locus tag?: PNEUPAN000734000
- symbol: SPN23F00940
- pan gene symbol?: pavB
- synonym:
- product: cell wall surface anchor family protein (pseudogene)
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS, pseudogene
- locus tag: SPN23F00940 [new locus tag: SPN23F_RS00485 ]
- symbol: SPN23F00940
- product: cell wall surface anchor family protein (pseudogene)
- replicon: chromosome
- strand: +
- coordinates: 88674..90242
- length: 1569
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FM211187 (88674..90242) NCBI
- BioCyc: see SPN23F_RS00485
- MicrobesOnline: 5829980 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0080 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1561GTGATTCCATACGAACTCTTCGCAGGTGATGGTATGTTGACTCGTCTCTTGCTCAAGGCA
TCTGACAAGGCACCATGGTCAGATAACGGTGACGCTAAAAACCCAGCCCTATCTCCACTA
GGTGAAAACGTGAAGACCAAAGGTCAATACTTCTATCAAGTAGCCTTGGACGGAAATGTA
GCTGGCAAAGAAAAACAAGCGCTCATTGACCAGTTCCGAGCAAATGGTACTCAAACTTAC
AGCGCTACAGTCAATGTCTATGGTAACAAAGACGGTAAACCAGACTTGGACAACATCGTA
GCAACTAAAAAAGTCACTATTAAGATAAACGGTTTAATTTCTAAAGAAACAGTTCAAAAA
GCCGTTGCAGACAACGTTAAAGACAGTATCGATGTTCCAGCAGCCTACCTAGAAAAAGCC
AAGGGTGAAGGTCCATTCACAGCAGGTGTCAACCATGTGATTCCATACGAACTCTTCGCA
GGTGATGGTATGTTGACTCGTCTCTTGCTCAAGGCATCTGACAAGGCACCATGGTCAGAT
AACGGTGACGCTAAAAACCCAGCCCTATCTCCACTAGGTGAAAACGTGAAGACCAAAGGT
CAATACTTCTATCAATTAGCCTTGGACGGAAATGTAGCTGGCAAAGAAAAACAAGCGCTC
ATTGACCAGTTCCGAGCAAACGGTACTCAAACTTACAGCGCTACAGTCAATGTCTATGGT
AACAAAGACGGTAAACCAGACTTGGACAACATCGTAGCAACTAAAAAAGTCACTATTAAC
ATAAACGGTTTAATTTCTAAAGAAACAGTTCAAAAAGCCGTTGCAGACAACGTTAAGGAC
AGTATCGATGTTCCAGCAGCCTACCTAGAAAAAGCCAAGGGTGAAGGTCCATTCACAGCA
GGTGTCAACCATGTGATTCCATACGAACTCTTCGCAGGTGATGGCATGTTGACTCGTCTC
TTGCTCAAGGCATCTGACAAGGCACCATGGTCAGATAACGGCGACGCTAAAAACCCAGCC
CTATCTCCACTAGGTGAAAACGTGAAGACCAAAGGTCAATACTTCTATCAATTAGCCTTG
GACGGAAATGTAGCTGGCAAAGAAAAACAAGCGCTCATTGACCAGTTCCGAGCAAATGGT
ACTCAAACTTACAGCGCTACAGTCAATGTCTATGGTAACAAAGACGGTAAACCAGATTTG
GACAACATCGTAGCAACTAAAAAAGTCACTATTAAGATAAATGTTAAAGAAACATCAGAC
ACAGCAAATGGTTCATTATCACCTTCTAACTCTGGTTCTGGCGTGACTCCGATGAATCAC
AATCATGCTACAGGTACTACAGATAGCATGCCTGCTGACACCATGACAAGTTCTACCAAC
ACGATGGCAGGTGAAAACATGGCTGCTTCTGCTAACAAGATGTCTGATACGATGATGTCA
GAGGATAAAGCTATGCTACCAAATACTGGTGAGACTCAAACATCAATGGCAAGTATTGGT
TTCCTTGGGCTTGCGCTTGCAGGTTTACTCGGTGGTCTAGGTTTGAAAAACAAAAAAGAA
GAAAACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN23F00940 [new locus tag: SPN23F_RS00485 ]
- symbol: SPN23F00940
- description: cell wall surface anchor family protein (pseudogene)
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb:
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0080 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Inga Jensch, Gustavo Gámez, Michael Rothe, Sandra Ebert, Marcus Fulde, Daniela Somplatzki, Simone Bergmann, Lothar Petruschka, Manfred Rohde, Roland Nau, Sven Hammerschmidt
PavB is a surface-exposed adhesin of Streptococcus pneumoniae contributing to nasopharyngeal colonization and airways infections.
Mol Microbiol: 2010, 77(1);22-43
[PubMed:20444103] [WorldCat.org] [DOI] (I p)Ulrike Binsker, Thomas P Kohler, Krystin Krauel, Sylvia Kohler, Hansjörg Schwertz, Sven Hammerschmidt
Pneumococcal Adhesins PavB and PspC Are Important for the Interplay with Human Thrombospondin-1.
J Biol Chem: 2015, 290(23);14542-55
[PubMed:25897078] [WorldCat.org] [DOI] (I p)Sajida Kanwal, Inga Jensch, Gottfried J Palm, Mark Brönstrup, Manfred Rohde, Thomas P Kohler, Daniela Somplatzki, Werner Tegge, Howard F Jenkinson, Sven Hammerschmidt
Mapping the recognition domains of pneumococcal fibronectin-binding proteins PavA and PavB demonstrates a common pattern of molecular interactions with fibronectin type III repeats.
Mol Microbiol: 2017, 105(6);839-859
[PubMed:28657670] [WorldCat.org] [DOI] (I p)