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serotype 1

NCBI: 06-FEB-2015

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 700669
  • locus tag: SPN23F08080 [new locus tag: SPN23F_RS04125 ]
  • pan locus tag?: PNEUPAN001850000
  • symbol: SPN23F08080
  • pan gene symbol?: hsdS
  • synonym:
  • product: putative type I RM modification enzyme

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN23F08080 [new locus tag: SPN23F_RS04125 ]
  • symbol: SPN23F08080
  • product: putative type I RM modification enzyme
  • replicon: chromosome
  • strand: +
  • coordinates: 789852..790394
  • length: 543
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAAAAAAGTGAAGTTGGGGGAAATCTTATCTCTAAAAAAAGGAAAGAAAGCCACTGTA
    CTTGCTGAACAAACAACTCTAAGCCAACGTTATATTCAAATAGATGATTTAAGAAATAAT
    AATAATTTAAAATTCACTGAAAGTTTAAATATGACTGAAGCACTCCCAGATGATATTCTG
    ATAGCATGGGATGGAGCTAATGCAGGAACAGTTGGTTATGGATTATCGGGAGCTGTTGGT
    AGTACAATTACGGTCTTAAAAAAGAATGAGCGATACAAAGAAAAAATTATATCAGATTAC
    TTGGGAGTCTTTTTGGAAAGTAAATCGCAGTATTTACGAGAACATTCAACAGGTGCAACA
    ATTCCTCATTTAAACAAGAATATATTACTTGATTTACAATTAGAATTGCTAGGTATCGAA
    GAACAAGAGAACATTATCTGTATTCTTAATACGATTAAAAGGCTTATTACTAAAAGAAAA
    TTGCAGTTAGATGAACTAAACTTGCTCGTCAAATCCCGATATTCCGAGGAGGTGGTTGCA
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    543

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN23F08080 [new locus tag: SPN23F_RS04125 ]
  • symbol: SPN23F08080
  • description: putative type I RM modification enzyme
  • length: 180
  • theoretical pI: 8.91959
  • theoretical MW: 20258.3
  • GRAVY: -0.225

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)
    DNA Metabolism DNA Metabolism - no subcategory Restriction-Modification System  Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)
    and 1 more
    DNA Metabolism DNA Metabolism - no subcategory Type I Restriction-Modification  Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)
  • PFAM:
    TRD (CL0477) Methylase_S; Type I restriction modification DNA specificity domain (PF01420; HMM-score: 41.4)
    and 1 more
    SH3 (CL0010) GW; GW (Gly-Tryp) dipeptide domain (PF13457; HMM-score: 13.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8946
    • Cytoplasmic Membrane Score: 0.0119
    • Cell wall & surface Score: 0.001
    • Extracellular Score: 0.0926
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00798
    • TAT(Tat/SPI): 0.000217
    • LIPO(Sec/SPII): 0.000701
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CAR68642 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKVKLGEILSLKKGKKATVLAEQTTLSQRYIQIDDLRNNNNLKFTESLNMTEALPDDILIAWDGANAGTVGYGLSGAVGSTITVLKKNERYKEKIISDYLGVFLESKSQYLREHSTGATIPHLNKNILLDLQLELLGIEEQENIICILNTIKRLITKRKLQLDELNLLVKSRYSEEVVA

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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