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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 06-FEB-2015

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 700669
  • locus tag: SPN23F08090 [new locus tag: SPN23F_RS04130 ]
  • pan locus tag?: PNEUPAN001854000
  • symbol: SPN23F08090
  • pan gene symbol?: —
  • synonym:
  • product: putative type I RM modification enzyme

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN23F08090 [new locus tag: SPN23F_RS04130 ]
  • symbol: SPN23F08090
  • product: putative type I RM modification enzyme
  • replicon: chromosome
  • strand: +
  • coordinates: 790391..791509
  • length: 1119
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAAGAAGGTGAAATTAGGTGAAGTGGCTACTTTTATCAATGGCTATGCTTTTAAACCT
    CAAGATTGGTCATCTGAAGGGAAAGAGATTATCAGAATACAGAATCTGACTAAAACTTCA
    ACAGAGATAAATTATTATTCGGGTATGATTGATAAAAAATACATTGTTGAAGCTGGTGAT
    ATTCTTATTTCGTGGTCGGGTACATTAGGGGTTTTTCAGTGGCGTGGAAGATCCGCAGTG
    TTAAATCAGCACATTTTTAAAGTGGTTTTTGATAAGATAGATATAGATAAATCGTATTTT
    AAATATGTTGTTGAAAAAGGTTTACAAGATGCTGTAAAACATACTCATGGTTCCACAATG
    AAACATTTAACTAAAAAATATTTTGATAATATTATAGTTCCATATACAAATTTGGGAGAG
    CAACAAAGAATTGCAAGTGAGCTGGATTTGTTAAGCAAGCTGATTTTAAGGAGACAAGAA
    CAACTTGAAGAGCTTAATCTACTTGTAAAATCCCGATTTAACGAGATGTTTGGGGAAAAT
    AAAATATTTGAAAGCATTGATAACTTATTTGATATTATAGATGGTGATAGGGGCAAAAAT
    TATCCTAAATCAGATGAGTTGTTTAGTGAGGAGTACTGTTTATTTTTAAATACAAAGAAT
    GTTACTAAAAACGGATTTTCATTCGATACAAAGCAATTTATCACTAAAACAAAGGATAAA
    TTACTTCGAAAAGGCAAACTTGAGCGTTATGATATAGTCTTGACAACAAGAGGTACTGTT
    GGAAATGTAGCGTACTACGATGAATTAATAAAATATAAACATTTACGTATAAATTCAGGT
    ATGGTAATATTACGTCCCAAGACACCAAATCTAAATCAGAAATTTATTATCCATGTTTTA
    AGGAATAATAATTATAGTCGAGTGATATCAGGAAGTGCTCAGCCTCAGTTACCAATTACA
    AAATTAAAAAAAATACTTCTCCCCCTTCCCCCACTAGCCCTCCAAAATGAGTTCGCAGAC
    TTTGTAGCCCTGGTCGACAAATCACAATTGGCAATCCAAAAATCTCTGGAAGAACTTGAA
    ACTTTGAAGAAATCTCTGATGCAGGAGTATTTTGGCTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1119

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN23F08090 [new locus tag: SPN23F_RS04130 ]
  • symbol: SPN23F08090
  • description: putative type I RM modification enzyme
  • length: 372
  • theoretical pI: 9.85974
  • theoretical MW: 43033.5
  • GRAVY: -0.362366

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)
    DNA Metabolism DNA Metabolism - no subcategory Restriction-Modification System  Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)
    and 1 more
    DNA Metabolism DNA Metabolism - no subcategory Type I Restriction-Modification  Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)
  • PFAM:
    TRD (CL0477) Methylase_S; Type I restriction modification DNA specificity domain (PF01420; HMM-score: 121.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8625
    • Cytoplasmic Membrane Score: 0.0218
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.1154
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.029296
    • TAT(Tat/SPI): 0.000376
    • LIPO(Sec/SPII): 0.003453
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CAR68643 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKVKLGEVATFINGYAFKPQDWSSEGKEIIRIQNLTKTSTEINYYSGMIDKKYIVEAGDILISWSGTLGVFQWRGRSAVLNQHIFKVVFDKIDIDKSYFKYVVEKGLQDAVKHTHGSTMKHLTKKYFDNIIVPYTNLGEQQRIASELDLLSKLILRRQEQLEELNLLVKSRFNEMFGENKIFESIDNLFDIIDGDRGKNYPKSDELFSEEYCLFLNTKNVTKNGFSFDTKQFITKTKDKLLRKGKLERYDIVLTTRGTVGNVAYYDELIKYKHLRINSGMVILRPKTPNLNQKFIIHVLRNNNYSRVISGSAQPQLPITKLKKILLPLPPLALQNEFADFVALVDKSQLAIQKSLEELETLKKSLMQEYFG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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