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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 11-FEB-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 700669
  • locus tag: SPN23F_RS01680 [old locus tags: SPN23F03260 SPN23F_03260 ]
  • pan locus tag?: PNEUPAN000562000
  • symbol: SPN23F_RS01680
  • pan gene symbol?: wchV
  • synonym:
  • product: glycosyltransferase family 2 protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN23F_RS01680 [old locus tags: SPN23F03260 SPN23F_03260 ]
  • symbol: SPN23F_RS01680
  • product: glycosyltransferase family 2 protein
  • replicon: chromosome
  • strand: +
  • coordinates: 311225..312196
  • length: 972
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_011900 (311225..312196) NCBI
  • BioCyc: SPN23F_RS01680 BioCyc
  • MicrobesOnline: see SPN23F03260
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGGAAAAATTAGTTAGTATTATTCTGCCCGTCTACAATGTCGAACAGTATATAAAAAAT
    TGTTTAGAATCAATTCAACAACAAACTTATTCAAATTTGGAAGTAATCATTGTTAATGAC
    GGTTCAACCGATAAAAGCGTTGAATATTGTGAGCAAATTTGCAAGATAGATTCTAGGTTT
    TCTATCACTCACAAAGAAAATGGTGGACTTTCCGATGCAAGAAATGTCGGTATAGATAAA
    TCCAAGGGAGATTACCTCATTTTTGTTGACAGTGATGATTTTGTCTCTCAAGATATGGTA
    TCTTATTTAGTATCTTGTATGGAGAACAATGAGGCAGACATTGCTATTTGCGATCCTGTT
    CATTATTACAGTGATCGTCAAAACAATGATCTTAATATTTTTTCTCCGGCATCAAACGTT
    AAGGTTTACGAAACAACGGAGGCTCTATGTGAGATGTTTTATCAAAAATCTTTTTTGGTG
    TCTGCCTGGGCCAAGATATTTAAAAGAGAGTTGTTTGATGATATAAGATTTCCTGTAGGT
    AAGCTATTTGAAGATAGTGCGATTATGTATTTGCTCTTCGAAAAATGTGAAACAATTGCA
    TACTCTGATGCGGAATTATATGCTTATGTACACAGGGATAATAGCATCACAACAAAGAAA
    TTTTCGGATAGAGACTTAGATATTTTGGAGATTACGAACACAATTATTAATCACTATGGT
    GATAATTTACGCGTGTATACTGCAGCGGTGTCTTATAAGGTATCTGCATGTTTCAGAATT
    CTATTAAACTCACCTTCTGGAGAAAAGTATAAAAAAGTACAAAAAGAATGTCTGAGTTAT
    ATTTTACAAAATTGGAGAAACATATTATTTAATAATAATGTTCGATTGAAGAACAAGCTT
    GCCTTAATTTCTATAACTATTTTCAATCCTTTTGTTAAATTTATCTATAGTAAAGTAAAC
    AGATGGGAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    972

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN23F_RS01680 [old locus tags: SPN23F03260 SPN23F_03260 ]
  • symbol: SPN23F_RS01680
  • description: glycosyltransferase family 2 protein
  • length: 323
  • theoretical pI: 4.99466
  • theoretical MW: 37477.4
  • GRAVY: -0.213003

⊟Function[edit | edit source]

  • reaction:
    EC 2.4.-.-?  ExPASy
  • TIGRFAM:
    poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 76.8)
    putative glycosyltransferase, exosortase G-associated (TIGR03111; HMM-score: 65.3)
    and 11 more
    chitooligosaccharide synthase NodC (TIGR04242; EC 2.4.1.-; HMM-score: 55.4)
    Unknown function Enzymes of unknown specificity transferase 2, rSAM/selenodomain-associated (TIGR04283; EC 2.-.-.-; HMM-score: 55.2)
    colanic acid biosynthesis glycosyltransferase WcaA (TIGR04017; EC 2.4.-.-; HMM-score: 49.2)
    mycofactocin system glycosyltransferase (TIGR03965; HMM-score: 48.9)
    glycosyltransferase domain (TIGR04440; EC 2.-.-.-; HMM-score: 41.5)
    colanic acid biosynthesis glycosyltransferase WcaE (TIGR04009; EC 2.4.-.-; HMM-score: 34.8)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides rhamnosyltransferase (TIGR01556; EC 2.4.1.-; HMM-score: 30.6)
    hopene-associated glycosyltransferase HpnB (TIGR03469; HMM-score: 25.9)
    glycosyltransferase, TIGR04182 family (TIGR04182; HMM-score: 24.3)
    hopanoid biosynthesis associated glycosyl transferase protein HpnI (TIGR03472; HMM-score: 11.7)
    Metabolism Amino acid biosynthesis Aromatic amino acid family 3-dehydroquinate synthase (TIGR01357; EC 4.2.3.4; HMM-score: 11.3)
  • TheSEED: see SPN23F03260
  • PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 124.8)
    and 7 more
    Glyco_tranf_2_2; Glycosyltransferase like family 2 (PF10111; HMM-score: 65.9)
    Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 48)
    Glyco_tranf_2_4; Glycosyl transferase family 2 (PF13704; HMM-score: 23.9)
    Glyco_tranf_2_5; Glycosyltransferase like family (PF13712; HMM-score: 16.1)
    no clan defined DUF6660; Family of unknown function (DUF6660) (PF20365; HMM-score: 14.6)
    GT-A (CL0110) Glyco_transf_21; Glycosyl transferase family 21 (PF13506; HMM-score: 12.3)
    Glyco_trans_2_3; Glycosyl transferase family group 2 (PF13632; HMM-score: 11.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.17
    • Cytoplasmic Membrane Score: 9.51
    • Cellwall Score: 0.16
    • Extracellular Score: 0.15
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0117
    • Cytoplasmic Membrane Score: 0.9364
    • Cell wall & surface Score: 0.0008
    • Extracellular Score: 0.051
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.024208
    • TAT(Tat/SPI): 0.000197
    • LIPO(Sec/SPII): 0.003315
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000413826 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEKLVSIILPVYNVEQYIKNCLESIQQQTYSNLEVIIVNDGSTDKSVEYCEQICKIDSRFSITHKENGGLSDARNVGIDKSKGDYLIFVDSDDFVSQDMVSYLVSCMENNEADIAICDPVHYYSDRQNNDLNIFSPASNVKVYETTEALCEMFYQKSFLVSAWAKIFKRELFDDIRFPVGKLFEDSAIMYLLFEKCETIAYSDAELYAYVHRDNSITTKKFSDRDLDILEITNTIINHYGDNLRVYTAAVSYKVSACFRILLNSPSGEKYKKVQKECLSYILQNWRNILFNNNVRLKNKLALISITIFNPFVKFIYSKVNRWE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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