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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 13-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 700669
- locus tag: SPN23F_RS06170 [old locus tags: SPN23F12150 SPN23F_12150 ]
- pan locus tag?: PNEUPAN002673000
- symbol: SPN23F_RS06170
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN23F_RS06170 [old locus tags: SPN23F12150 SPN23F_12150 ]
- symbol: SPN23F_RS06170
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1182499..1182822
- length: 324
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_011900 (1182499..1182822) NCBI
- BioCyc: SPN23F_RS06170 BioCyc
- MicrobesOnline: see SPN23F12150
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301ATGACTAACTCTGTATTTTCGACAATGCAAGATATTGAGAATGTTGCAACCGATATTATA
AAATCATATGATAATGAGATTTATACGTATAAAGCTGTCTCCCAAGAAGAATTGGAAAAA
CTAGAAAAAAGTTATGATGAAAAAAGTCACGAAGAATTAATTTCAATAGAAAGCAATTTA
GAAATGAAACAACAGAACCTCATTGATGAGGTTAATAAAACAATCAAGGAAAATGATGCA
AAGATTCAGTATATTTCATCAAGTAGGAGAGGAGAATTTGTAGAAAAAATTATTGGTAGG
GTGGTAGAAAAATATGGCTATTAG60
120
180
240
300
324
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN23F_RS06170 [old locus tags: SPN23F12150 SPN23F_12150 ]
- symbol: SPN23F_RS06170
- description: hypothetical protein
- length: 107
- theoretical pI: 4.39203
- theoretical MW: 12524.9
- GRAVY: -0.76729
⊟Function[edit | edit source]
- TIGRFAM: two transmembrane protein (TIGR04527; HMM-score: 15.3)
- TheSEED: see SPN23F12150
- PFAM: MACRO (CL0223) DUF2362; Uncharacterised conserved protein (DUF2362) (PF10154; HMM-score: 14.1)no clan defined DUF2959; Protein of unknown function (DUF2959) (PF11172; HMM-score: 13.4)TMPIT; TMPIT-like protein (PF07851; HMM-score: 11.8)and 1 moreHTH (CL0123) Cdh1_DBD_1; Chromodomain helicase DNA-binding domain 1 (PF18196; HMM-score: 9.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003197
- TAT(Tat/SPI): 0.000232
- LIPO(Sec/SPII): 0.00046
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000185365 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTNSVFSTMQDIENVATDIIKSYDNEIYTYKAVSQEELEKLEKSYDEKSHEELISIESNLEMKQQNLIDEVNKTIKENDAKIQYISSSRRGEFVEKIIGRVVEKYGY
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.