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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 26-AUG-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPN994038
- locus tag: SPN994038_03140 [new locus tag: SPN994038_RS01690 ]
- pan locus tag?: PNEUPAN001097000
- symbol: SPN994038_03140
- pan gene symbol?: —
- synonym:
- product: PTS transporter
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN994038_03140 [new locus tag: SPN994038_RS01690 ]
- symbol: SPN994038_03140
- product: PTS transporter
- replicon: chromosome
- strand: +
- coordinates: 300217..300723
- length: 507
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FQ312041 (300217..300723) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0282 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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481ATGGATAAAAAAGAACGACAAAAGATTGAACAACAACGTCGAGAGATGGCTCTAACTAAT
ACTTTTTTTAATCGATATCTTCTTCTACGTTATTCAATAGCACTCTTCTTTTTTGGGAAT
ATTTATTGGCTTTTGAATCAGTTTATTAATCCCTCGCCTATTATTATTTTCCCCATTATG
CTCATAGTATTTTCTATTTTAGCAACTATTGAACAATTTAAACTTTATAGAAATAGGAAA
GAAAAGTTGGGAATAACACTAATGTTTGTTAGAATACAAATGCTTATTTCAATAGGATTA
CTTGTTTTAACTTGGACAAGTTGGTTTAAGAATCTTTTTCCGATTTTTGAAAATAACCAA
GTAGCACGTTTATTTGTTTTTGTAGTTCTTCTATTAGGTTTAGTTCTGAGTTTGTTAGAC
ATTAGAAGAATTAAAAAAATTTATAAACGAACAGATAAGGTTTATCAACAATTTGTCCAA
TTGGAAAAGAACTCACTTAGTTTATAA60
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507
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN994038_03140 [new locus tag: SPN994038_RS01690 ]
- symbol: SPN994038_03140
- description: PTS transporter
- length: 168
- theoretical pI: 10.9942
- theoretical MW: 20265.3
- GRAVY: 0.355952
⊟Function[edit | edit source]
- TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 11.2)
- TheSEED: data available for D39, TIGR4
- PFAM: no clan defined DUF202; Domain of unknown function (DUF202) (PF02656; HMM-score: 17.7)Acyl_transf_3 (CL0316) Acyl_transf_3; Acyltransferase family (PF01757; HMM-score: 16.1)and 4 moreno clan defined DUF2304; Uncharacterized conserved protein (DUF2304) (PF10066; HMM-score: 13.5)T_cell_tran_alt; T-cell leukemia translocation-altered (PF15128; HMM-score: 13.4)DUF2085; Predicted membrane protein (DUF2085) (PF09858; HMM-score: 10.3)DUF4006; Family of unknown function (DUF4006) (PF13179; HMM-score: 8.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001762
- TAT(Tat/SPI): 0.00025
- LIPO(Sec/SPII): 0.006795
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CCP30050 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MDKKERQKIEQQRREMALTNTFFNRYLLLRYSIALFFFGNIYWLLNQFINPSPIIIFPIMLIVFSILATIEQFKLYRNRKEKLGITLMFVRIQMLISIGLLVLTWTSWFKNLFPIFENNQVARLFVFVVLLLGLVLSLLDIRRIKKIYKRTDKVYQQFVQLEKNSLSL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0282 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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