From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 24-FEB-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPN994038
  • locus tag: SPN994038_RS00315 [old locus tag: SPN994038_00560 ]
  • pan locus tag?: PNEUPAN000462000
  • symbol: SPN994038_RS00315
  • pan gene symbol?: smc_1
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN994038_RS00315 [old locus tag: SPN994038_00560 ]
  • symbol: SPN994038_RS00315
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 44035..47130
  • length: 3096
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_021026 (44035..47130) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    ATGGCAGGAAATATCAAAGGTATCAAAATTGAAATCGATGGCGACACGCAACCCTTGCAG
    AAGGCGTTAAAAGCTATTAATAAAGAGTCTGTTAATACTACAAATGAACTAAAACAAATT
    GATAAGGCTTTAAAGTTTGACACTGGGAACGTTATTTTACTAACCCAAAAACAAGAAGTC
    TTACAGAAACAAATAGGTATAACCAGAGACAAACTAGAAACTTTAAGACAAGCCCAATCT
    AAAGTAGATGAGGAATTTAAAAAGGGGAATATTGGTTCTGAACAGTATCGCGCTTTCCAG
    CGTGAAGTAGAAGTGACTCAAAATGTCCTAAAAGGATATGAGGGAAAGCTTGCCAGTCTC
    ACTCAAGCTCTTGAAGGAAATGGTGATGCAGCCAAGAACAATCAAGCTCAACTAAAAGAA
    TTGCAGAATGAACAAAAATTGCTTGCTAGTGAATCTGAAAAAGTAGTTAGTTCATTTAAA
    CTGCAAGAAAGCCAGATGGGTGCCAATGCTAGCGAAGCAGACAAGTTAGCATTAGCCGAA
    AAAAAGATTGGCGCACAGTCTGAAATCGTCACTCGTCAAATCGAAAACCTTGAGAAGCAG
    TTAAGCCTAACTAAAGAACAGTATGGCGAAAACTCAGCCGAAGCTAACAAGATGGAAGCA
    GAGCTAAATCAAGCTAAGACCGCTTACGCTAATCTTAATCAGGAATTAGGAAAACTTGGT
    AGTACAGCTAAGAGCAACCAAACGCAACTGAAAGAATTGCAGAATGAGCAGAGTCAACTT
    GCTTCAGAGATGAGTAAGGTGACAAGTTCATTCAAACTGCAAGAAAGTGCTTTGGGTTCA
    AATGCTAGTGAAGCCGAGAGAAATGCTCTTGCCCAGAAAAAGATTGGTGCCCAGTCTGAG
    ATTGTAAGTAAACAGATTTCAAATCTAGAACAGCAATTGGAAATCACTAAAAAAGAATTT
    GGTGAGAACTCCACACAAGCCAACAAGATGGAATCTGAGCTAAATCAGGCTAAGACTGCT
    TTTAATCATCTCAATGATGAGATGAAGGGAACAAAGTCTGCTGCTGATAGCACTCAAGAA
    AGTTTAAGTGAAATCTCAAGAAATTTAAGAGCAGAACTACTTCAACAGTTTAGTGAGAAG
    TTGAGTGCTATTTCAGAAAAGCTTGTGGAAGTAGGAAAAGAAGCGTTAGAAGCAGCTGCT
    CAAATGCAAGCTAGTAATGCTCAATTTACTACCGTTTTCGGAGATATGGAAACCCAAGCA
    AGAGAAGCGTTGAATGCTATTGGTCAGGAAATGGATATTGTCCCAGAGCGTTTACAAGGG
    TCATTTACTCAGATGGCTTCATTTGCAAAGACTTCAGGATTGGATACAGCAGAAGCTTTG
    GATCTTACTTCTCGTGCAACTAGGGCAGCAGCAGACGGTGCAGCCTTCTATGACAAATCT
    ATTGAGAGCGTGACAGAGAGCTTACAATCTTTTTTGAAGGGAAACTTTGCTAACGATGCG
    GCTCTTGGCATTTCTGCAACAGAAACGACCAGGAATGCCGCTGCAAATAAATTGTACGGA
    AAGTCATTCAAGGACTTGAGCGAAGCGCAGAAGCAATTGACCTTGCTTCAGATGGTCGAA
    GACGGAAATAAACTCTCAGGAGCTCTTGGACAGGCTGCAAGAGAATCAGACGGCCTAGAA
    AACGTGATGGGGAATCTGAAACAAGCTGGGACCAATGCATTATCTGCTATTGGTCAACCT
    CTTCTAGAAATGATGATTCCTGTTTTTCAAACCTTGGCAACGATTGTGAAAGGTGTAGCT
    GAGCTGTTCAGTTCCTTACCTGCTCCAGTAAAAGATTTTGTTGTTATTTTAGGAACAGTT
    GTGACTGCTGTAGGGGTCATAGCCCCCATATTCTTATCGTTGCAAGCCCTTGCTGAGTTT
    TTAAAAATATCTATTGGAGAAATGATAATTGCCGCATTGCCAATTATTGGAACAGCTATT
    GCAATTGCTGCTGCAGTTGCTGCAATTGTTGCTATTGTGAAATATCTCTGGGAAACTAAC
    GAAGGTTTTCGAGATGCGGTCACGACCGTTTGGAATGCGATTCTTGAAGTTATCAATGCA
    GTCGTATCAGAGATTTCTAATTTTGTCATGAGTATCTTTGGAACGGTTGTTACTTGGTGG
    ACGGAGAACCAGGAACTTATCAGGACAAGTGCTGAGACTGTCTGGAATGCCATTTATACG
    GTCATCAGTACAATACTGGATATACTTGGCCCCTTGCTCCAAGCTGGCTGGGATAACATT
    CAACTGATCATTACAACAACTTGGGAAATCATCAAGATCGTTGTTGAGACTGCAATCAAT
    GTTGTCCTTGGTGTTATCCAAGCAGTTATGCAGATCATTACTGGTGATTGGTCAGGAGCT
    TGGGAAACTATCAAGGGAGTGTTTTCTACTGTATGGCAAGCTATTCAAAGCATTGTTCAG
    ACTATTTTCTCAGCTATCCAGAGTTATATTTCAAATATTCTCAACGGCATTTCAGGAACT
    GTATCAAATATCTGGAACAGCATCAAGGACACTGTCTCAAATGTGTTAAATGCTATATCT
    AGTACTGTATCAAGTGTTTGGGAAGGTATCAAGAGTACCATTTCAAGTGCTATCAATGGT
    GCAAGGGATGCTGTTTCTTCAGCTATTGAAGCCATCAAAGGATTGTTTAACTTCAACATC
    AGCTGGCCACATATCCCACTACCTCACTTTTACGTGAGTGGTTCGGCCAATCCATTAGAT
    TGGTTGAGTCAAGGTGTTCCAAGTATTGGAATCGAATGGTATGCCAAAGGCGGTATCATG
    ACGAAACCAACTATCTTTGGAATGAATGGTAATAACATAATGGTTGGTGGTGAAGCTGGG
    AATGAAGCAGTATTGCCACTTAACGACAAAACGCTTGGAGCCATCGGTCGAGGTATCGCT
    CAAACTATGGGTGGAACTTCACCAACCATTAACATTACCATTACTGGCAACACTGTCAGA
    GAAGAAGCCGACATCAGTCGTATTGCTGATGAGGTGGCTCAGCGTATTGCTGACGAGTTG
    CAACGTAAGACACAATTGAGAGGAGGGTTTACATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3096

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN994038_RS00315 [old locus tag: SPN994038_00560 ]
  • symbol: SPN994038_RS00315
  • description: hypothetical protein
  • length: 1031
  • theoretical pI: 4.63988
  • theoretical MW: 111184
  • GRAVY: -0.102231

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 42.3)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 42.3)
    and 5 more
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 31.7)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 31.7)
    CXXX repeat peptide modification system protein (TIGR04116; HMM-score: 5.9)
    helix-rich protein (TIGR04523; HMM-score: 5.5)
    MSMEG_0570 family protein (TIGR04042; HMM-score: 5.2)
  • TheSEED:
  • PFAM:
    no clan defined DUF424; Protein of unknown function (DUF424) (PF04242; HMM-score: 16.4)
    DUF1664; Protein of unknown function (DUF1664) (PF07889; HMM-score: 14)
    DisA; DisA glycoprotein (PF19226; HMM-score: 13.9)
    and 10 more
    CCDC-167; Coiled-coil domain-containing protein 167 (PF15188; HMM-score: 13.1)
    DUF6616; Family of unknown function (DUF6616) (PF20321; HMM-score: 11.7)
    Phage_tail (CL0348) HK97-gp10_like; Bacteriophage HK97-gp10, putative tail-component (PF04883; HMM-score: 11)
    Aha1_BPI (CL0648) JHBP; Haemolymph juvenile hormone binding protein (JHBP) (PF06585; HMM-score: 11)
    no clan defined Fez1; Fez1 (PF06818; HMM-score: 10.7)
    Occludin_ELL; Occludin homology domain (PF07303; HMM-score: 8.5)
    IL32; Interleukin 32 (PF15225; HMM-score: 7.8)
    Prefoldin (CL0200) Prefoldin_3; Prefoldin subunit (PF13758; HMM-score: 7.5)
    no clan defined EzrA; Septation ring formation regulator, EzrA (PF06160; HMM-score: 7.1)
    CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like (PF07888; HMM-score: 5.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.3746
    • Cell wall & surface Score: 0.0086
    • Extracellular Score: 0.6167
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003149
    • TAT(Tat/SPI): 0.000214
    • LIPO(Sec/SPII): 0.000483
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000918318 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MAGNIKGIKIEIDGDTQPLQKALKAINKESVNTTNELKQIDKALKFDTGNVILLTQKQEVLQKQIGITRDKLETLRQAQSKVDEEFKKGNIGSEQYRAFQREVEVTQNVLKGYEGKLASLTQALEGNGDAAKNNQAQLKELQNEQKLLASESEKVVSSFKLQESQMGANASEADKLALAEKKIGAQSEIVTRQIENLEKQLSLTKEQYGENSAEANKMEAELNQAKTAYANLNQELGKLGSTAKSNQTQLKELQNEQSQLASEMSKVTSSFKLQESALGSNASEAERNALAQKKIGAQSEIVSKQISNLEQQLEITKKEFGENSTQANKMESELNQAKTAFNHLNDEMKGTKSAADSTQESLSEISRNLRAELLQQFSEKLSAISEKLVEVGKEALEAAAQMQASNAQFTTVFGDMETQAREALNAIGQEMDIVPERLQGSFTQMASFAKTSGLDTAEALDLTSRATRAAADGAAFYDKSIESVTESLQSFLKGNFANDAALGISATETTRNAAANKLYGKSFKDLSEAQKQLTLLQMVEDGNKLSGALGQAARESDGLENVMGNLKQAGTNALSAIGQPLLEMMIPVFQTLATIVKGVAELFSSLPAPVKDFVVILGTVVTAVGVIAPIFLSLQALAEFLKISIGEMIIAALPIIGTAIAIAAAVAAIVAIVKYLWETNEGFRDAVTTVWNAILEVINAVVSEISNFVMSIFGTVVTWWTENQELIRTSAETVWNAIYTVISTILDILGPLLQAGWDNIQLIITTTWEIIKIVVETAINVVLGVIQAVMQIITGDWSGAWETIKGVFSTVWQAIQSIVQTIFSAIQSYISNILNGISGTVSNIWNSIKDTVSNVLNAISSTVSSVWEGIKSTISSAINGARDAVSSAIEAIKGLFNFNISWPHIPLPHFYVSGSANPLDWLSQGVPSIGIEWYAKGGIMTKPTIFGMNGNNIMVGGEAGNEAVLPLNDKTLGAIGRGIAQTMGGTSPTINITITGNTVREEADISRIADEVAQRIADELQRKTQLRGGFT

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPN994038_RS00315&oldid=145738"