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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 24-FEB-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPN994038
- locus tag: SPN994038_RS00680
- pan locus tag?: PNEUPAN000720000
- symbol: SPN994038_RS00680
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN994038_RS00680
- symbol: SPN994038_RS00680
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 118906..119127
- length: 222
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_021026 (118906..119127) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0087 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGAGTCTGCAAATCAAACTCAAGAAATTAGCCAAGGAATTAAGTAAACTTCTTAAAGAC
TCAAACCTTGAAACAGTAGATAAGGATGTCCTTGAAAACTCTCAAGAAGAACTTCAAAAA
GCAGTTTTGTTCTTGGCAGATGAAAAAGGCTCTGAGCATACTGCAGCAGAGTTGATTGAT
AATCTTAAAGAGGTTATTGCTAAGTTGAAAGCAAACGCCTAA60
120
180
222
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN994038_RS00680
- symbol: SPN994038_RS00680
- description: hypothetical protein
- length: 73
- theoretical pI: 5.14433
- theoretical MW: 8133.37
- GRAVY: -0.365753
⊟Function[edit | edit source]
- TIGRFAM: Fatty acid and phospholipid metabolism Biosynthesis glycerol-3-phosphate O-acyltransferase (TIGR03703; EC 2.3.1.15; HMM-score: 10.5)
- TheSEED: data available for D39, Hungary19A-6
- PFAM: RNase_H (CL0219) Terminase_3C; Terminase RNAseH like domain (PF17288; HMM-score: 15.9)Bet_v_1_like (CL0209) Fungal_KA1; Fungal kinase associated-1 domain (PF16797; HMM-score: 13.9)and 2 moreno clan defined DUF4404; Domain of unknown function (DUF4404) (PF14357; HMM-score: 12.5)bacHORMA_1; Bacterial HORMA domain family 1 (PF18138; HMM-score: 12.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.6972
- Cytoplasmic Membrane Score: 0.0514
- Cell wall & surface Score: 0.0044
- Extracellular Score: 0.247
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00084
- TAT(Tat/SPI): 0.000086
- LIPO(Sec/SPII): 0.000142
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000058099 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MSLQIKLKKLAKELSKLLKDSNLETVDKDVLENSQEELQKAVLFLADEKGSEHTAAELIDNLKEVIAKLKANA
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0087 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.