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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 26-AUG-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPN994039
- locus tag: SPN994039_09660 [new locus tag: SPN994039_RS05185 ]
- pan locus tag?: PNEUPAN002057000
- symbol: SPN994039_09660
- pan gene symbol?: pepE
- synonym:
- product: peptidase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPN994039_09660 [new locus tag: SPN994039_RS05185 ]
- symbol: SPN994039_09660
- product: peptidase
- replicon: chromosome
- strand: +
- coordinates: 970731..971339
- length: 609
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FQ312044 (970731..971339) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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601TTGAAAGAACAAATTTTTTTGATGGGTGGGAATCCCCCAATAAAGAAATATAGTATTGTT
GATAAAATTGTATTATCAACCAAGATTAAAAGAATTATCATTTTTACAGTTTTTCGAGAA
AATTGGGAACCGTACATGAAAAAGTACACGGAAGTTTTTCAAAGTCAATTTCCTAATCTA
AACATTGATTACTTGCTCCTGGACACTGAGCAGATTGATCTTGATAGCTATCTAGATGCT
GATCTAATTATCATCGGTGGTGGAAATACGGAAAAATATATAGCTACTTATGTCAATCAG
GAGTTCAAAAATTATATTGATCATATGCTTAACAAAGGGGCGAAAGTTATAGGGTTTTCT
GCAGGAGCCCTATTATTAGGAGAAAAAGTCTACGTCTCACCTAACGATAATTCAGATCAT
CAGATAAAGATAAAAGATGGATTAGGACTCTTTAGTCAGTTTTTAATTAGTGTCTATTAT
GATTCATGGAATGATAAAGCAAATAAGGATAGAGCTGAAGAACTCGTTAATGTTCCCATA
ATTCCACTAAATGATCATTCATGTCTTGTATTAGATAAACTTGGAAACATTATTGAGAAA
ATTGACTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPN994039_09660 [new locus tag: SPN994039_RS05185 ]
- symbol: SPN994039_09660
- description: peptidase
- length: 202
- theoretical pI: 4.90366
- theoretical MW: 23146.5
- GRAVY: -0.154455
⊟Function[edit | edit source]
- TIGRFAM: Energy metabolism Other cyanophycinase (TIGR02069; EC 3.4.15.6; HMM-score: 35.3)and 1 moreBiosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin cobyric acid synthase CobQ (TIGR00313; EC 6.3.5.10; HMM-score: 17.4)
- TheSEED:
- PFAM: Glutaminase_I (CL0014) Peptidase_S51; Peptidase family S51 (PF03575; HMM-score: 52.3)and 3 moreGATase_3; CobB/CobQ-like glutamine amidotransferase domain (PF07685; HMM-score: 31.3)BPL_N; Biotin-protein ligase, N terminal (PF09825; HMM-score: 15.5)no clan defined ARL2_Bind_BART; The ARF-like 2 binding protein BART (PF11527; HMM-score: 13.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.000795
- TAT(Tat/SPI): 0.00008
- LIPO(Sec/SPII): 0.00022
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CCP34660 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKEQIFLMGGNPPIKKYSIVDKIVLSTKIKRIIIFTVFRENWEPYMKKYTEVFQSQFPNLNIDYLLLDTEQIDLDSYLDADLIIIGGGNTEKYIATYVNQEFKNYIDHMLNKGAKVIGFSAGALLLGEKVYVSPNDNSDHQIKIKDGLGLFSQFLISVYYDSWNDKANKDRAEELVNVPIIPLNDHSCLVLDKLGNIIEKID
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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