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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 26-AUG-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPN994039
  • locus tag: SPN994039_16030 [new locus tag: SPN994039_RS08665 ]
  • pan locus tag?: PNEUPAN003355000
  • symbol: SPN994039_16030
  • pan gene symbol?: aatB
  • synonym:
  • product: putative DegT/DnrJ/EryC1/StrS family amino sugar synthetase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN994039_16030 [new locus tag: SPN994039_RS08665 ]
  • symbol: SPN994039_16030
  • product: putative DegT/DnrJ/EryC1/StrS family amino sugar synthetase
  • replicon: chromosome
  • strand: -
  • coordinates: 1624776..1626002
  • length: 1227
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: FQ312044 (1624776..1626002) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1619 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGCCAAATTACAATATTCCATTTTCACCGCCTGATATCACAGAAGCAGAAATTGCTGAA
    GTAGCGGATACCCTGCGTTCTGGTTGGATCACAACAGGTCCTAAAACAAAAGAACTGGAG
    CGCCGCTTGTATCTTTACACACAGACACCTAAGACTGTTTGTCTCAACTCTGCGACAGCT
    GCTCTGGAGTTGATTTTACGCGTTTTGGAAGTGGGACCTGGTGATGAAGTCATCGTTCCA
    GCCATGACCTATACGGCTTCATGTAGTGTCATTACGCACGTGGGAGCAACCCCTGTCATG
    GTGGATATCCAAGCAGATACGTTTGAGATGGACTATGACCTGCTTGAGCAAGCTATCACT
    GAGAAAACTAAGGTGATTATCCCAGTAGAGCTCGCAGGGATTGTTTGCGATTATGACCGT
    TTGTTCCAAGTCGTGGAGAAAAAACGTGACTTCTTTACCGCTTCAAGCAAGTGGCAAAAG
    GCCTTTAACCGTATTGTCATTGTCTCTGATAGTGCCCACGCTTTGGGATCTACTTATAAA
    GGACAACCTTCTGGTTCTATCGCTGACTTTACTTCCTTCTCATTCCATGCCGTTAAGAAC
    TTTACAACGGCAGAAGGTGGAAGTGCGACTTGGAAAGCCAATCCAGTGATTGATGACGAA
    GAGATGTACAAGGAATTCCAAATCCTTTCCCTTCACGGGCAAACTAAGGATGCTCTTGCC
    AAGATGCAATTGGGGTCATGGGAATACGATATCGTTACACCAGCCTATAAGTGCAACATG
    ACCGATATCATGGCTTCACTTGGTTTGGTACAATTGGACCGCTATCCAAGTTTGTTGCAA
    CGCCGTAAGGACATTGTGGACCGCTATGATAGTGGTTTTGCAGGTTCTCGCATCCATCCT
    TTGGCACACAAGACTGAAACTGTCGAATCTTCACGCCACCTCTACATCACCCGTGTAGAA
    GGAGCAAGCCTAGAAGAACGCAACCTCATCATCCAAGAATTGGCTAAAGCAGGAATTGCA
    AGTAATGTTCACTACAAACCGCTTCCTCTCTTGACAGCCTATAAGAATCTTGGATTTGAT
    ATGACGAACTATCCTAAGGCCTATGCCTTCTTTGAGAATGAAATTACCCTCCCTCTTCAT
    ACTAAATTAAGCGATGAAGAAGTAGACTATATCATTGAGACTTTCAAAACAGTTTCTGAA
    AAAGTGCTAACTTTATCAAAAAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1227

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN994039_16030 [new locus tag: SPN994039_RS08665 ]
  • symbol: SPN994039_16030
  • description: putative DegT/DnrJ/EryC1/StrS family amino sugar synthetase
  • length: 408
  • theoretical pI: 5.19337
  • theoretical MW: 45681.8
  • GRAVY: -0.169608

⊟Function[edit | edit source]

  • TIGRFAM:
    UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase (TIGR03588; EC 2.6.1.92; HMM-score: 306.1)
    and 9 more
    aminotransferase, LLPSF_NHT_00031 family (TIGR04181; HMM-score: 168.8)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides TDP-4-keto-6-deoxy-D-glucose transaminase (TIGR02379; HMM-score: 165.1)
    dTDP-4-dehydro-6-deoxyglucose aminotransferase (TIGR04427; EC 2.-.-.-; HMM-score: 115.2)
    Cellular processes Cellular processes Biosynthesis of natural products capreomycidine synthase (TIGR03947; HMM-score: 25)
    putative C-S lyase (TIGR04350; EC 4.4.-.-; HMM-score: 17.1)
    tyrosine/nicotianamine family aminotransferase (TIGR01265; HMM-score: 16.8)
    cystathionine beta-lyase (TIGR01329; EC 4.4.1.8; HMM-score: 16.6)
    Metabolism Amino acid biosynthesis Histidine family histidinol-phosphate transaminase (TIGR01141; EC 2.6.1.9; HMM-score: 13.3)
    Metabolism Energy metabolism Amino acids and amines tyrosine aminotransferase (TIGR01264; EC 2.6.1.5; HMM-score: 13.2)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    PLP_aminotran (CL0061) DegT_DnrJ_EryC1; DegT/DnrJ/EryC1/StrS aminotransferase family (PF01041; HMM-score: 311.9)
    and 2 more
    Aminotran_1_2; Aminotransferase class I and II (PF00155; HMM-score: 34.9)
    Cys_Met_Meta_PP; Cys/Met metabolism PLP-dependent enzyme (PF01053; HMM-score: 20.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9893
    • Cytoplasmic Membrane Score: 0.001
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0097
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.0261
    • TAT(Tat/SPI): 0.005898
    • LIPO(Sec/SPII): 0.000835
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CCP35297 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MPNYNIPFSPPDITEAEIAEVADTLRSGWITTGPKTKELERRLYLYTQTPKTVCLNSATAALELILRVLEVGPGDEVIVPAMTYTASCSVITHVGATPVMVDIQADTFEMDYDLLEQAITEKTKVIIPVELAGIVCDYDRLFQVVEKKRDFFTASSKWQKAFNRIVIVSDSAHALGSTYKGQPSGSIADFTSFSFHAVKNFTTAEGGSATWKANPVIDDEEMYKEFQILSLHGQTKDALAKMQLGSWEYDIVTPAYKCNMTDIMASLGLVQLDRYPSLLQRRKDIVDRYDSGFAGSRIHPLAHKTETVESSRHLYITRVEGASLEERNLIIQELAKAGIASNVHYKPLPLLTAYKNLGFDMTNYPKAYAFFENEITLPLHTKLSDEEVDYIIETFKTVSEKVLTLSKK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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