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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 27-FEB-2015
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPNA45
- locus tag: SPNA45_00358 [new locus tag: SPNA45_RS02160 ]
- pan locus tag?: PNEUPAN003418000
- symbol: SPNA45_00358
- pan gene symbol?: tacL
- synonym:
- product: putative polysaccharide repeat unit polymerase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNA45_00358 [new locus tag: SPNA45_RS02160 ]
- symbol: SPNA45_00358
- product: putative polysaccharide repeat unit polymerase
- replicon: chromosome
- strand: +
- coordinates: 358258..359301
- length: 1044
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: HE983624 (358258..359301) NCBI
- BioCyc: see SPNA45_RS02160
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1672 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1021ATGAAAAGTATTCTTCAGAAAATGGGGGAGCATCCGATGCTGCCTCTTTTTCTTAGCTAT
AGTACTGTTATATCCATTCTTGCACAAAATTGGATGGGTCTTGTGGCTTCAGTAGGAATG
TTTCTATTTACTATTTTCTTTTTGCACTATCAGTCGATTTTATCCCATAAATTCTTTCGA
TTGATTTTGCAGTTCGTCTTGTTTGGTAGTGTCTTGTCAGCTGCTTTTGCCAGTTTAGAA
CATTTCCAAATTGTGAAGAAATTTAACTATGCTTTTCTTTCACCCAATATGCAGGTGTGG
CATCAGAACCGGGCAGAAGTGACCTTCTTTAATCCTAATTATTATGGAATTATTTGTTGT
TTCTGTATTATGATTGCTTTCTATCTGTTTACAACGACCAAGTTGAATTGGTTGAAAGTA
TTCTGTGTGATTGCAGGCTTTGTTAATCTCTTTGGTTTGAACTTTACTCAAAATCGAACT
GCCTTTCCTGCTATTATCGCTGGAGCAATTATCTATCTCTTTACGACTATTAAAAACTGG
AAGGCCTTTTGGCTTAGTATTGGGGTCTTCGCGATTGGTTTGAGTTTCCTCTTTTCTAGT
GATTTGGGAGTTCGAATGGGTACTTTAGACTCTTCTATGGAAGAACGCATTTCTATCTGG
GATGCTGGGATGGCCTTGTTTAAGCAAAATCCTTTTTGGGGTGAAGGGCCATTGACCTAT
ATGCACTCTTATCCTCGGATACATGCTCCTTATCATGAACATGCCCACAGTCTTTATATT
GATACGATTCTGAGTTACGGAATTGTGGGTACCATTTTATTAGTTTTGTCTTCTGTTGCT
CCTGTTCGCTTGATGATGGATATGAGTCAGGAGTCGGGGAAACGTCCGATTATCGGCCTT
TATCTATCTTTCCTTACAGTGGTTGCTGTGCACGGAATTTTTGACTTGGCTCTCTTCTGG
ATTCAGTCAGGCTTTATTTTCTTGCTAGTTATGTGCAGTATTCCATTGGAGCATCGAATG
TTGGTATCGGACATGACGGATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNA45_00358 [new locus tag: SPNA45_RS02160 ]
- symbol: SPNA45_00358
- description: putative polysaccharide repeat unit polymerase
- length: 347
- theoretical pI: 8.45636
- theoretical MW: 39586.7
- GRAVY: 0.675216
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids putative bicarbonate transporter, IctB family (TIGR00947; HMM-score: 30)and 1 moreCell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides oligosaccharide repeat unit polymerase (TIGR04370; HMM-score: 22.1)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: O-anti_assembly (CL0499) Wzy_C; O-Antigen ligase (PF04932; HMM-score: 49.6)and 2 moreno clan defined DUF6703; Family of unknown function (DUF6703) (PF20444; HMM-score: 12.5)Mst1_SARAH; C terminal SARAH domain of Mst1 (PF11629; HMM-score: 11.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 10
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.9984
- Cell wall & surface Score: 0
- Extracellular Score: 0.0015
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00188
- TAT(Tat/SPI): 0.000157
- LIPO(Sec/SPII): 0.014276
- predicted transmembrane helices (TMHMM): 9
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CCM07648 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKSILQKMGEHPMLPLFLSYSTVISILAQNWMGLVASVGMFLFTIFFLHYQSILSHKFFRLILQFVLFGSVLSAAFASLEHFQIVKKFNYAFLSPNMQVWHQNRAEVTFFNPNYYGIICCFCIMIAFYLFTTTKLNWLKVFCVIAGFVNLFGLNFTQNRTAFPAIIAGAIIYLFTTIKNWKAFWLSIGVFAIGLSFLFSSDLGVRMGTLDSSMEERISIWDAGMALFKQNPFWGEGPLTYMHSYPRIHAPYHEHAHSLYIDTILSYGIVGTILLVLSSVAPVRLMMDMSQESGKRPIIGLYLSFLTVVAVHGIFDLALFWIQSGFIFLLVMCSIPLEHRMLVSDMTD
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1672 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Kaifeng Wu, Jian Huang, Yanqing Zhang, Wenchun Xu, Hongmei Xu, Libin Wang, Ju Cao, Xuemei Zhang, Yibing Yin
A novel protein, RafX, is important for common cell wall polysaccharide biosynthesis in Streptococcus pneumoniae: implications for bacterial virulence.
J Bacteriol: 2014, 196(18);3324-34
[PubMed:25002545] [WorldCat.org] [DOI] (I p)