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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 27-FEB-2015

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPNA45
  • locus tag: SPNA45_01788 [new locus tag: SPNA45_RS09980 ]
  • pan locus tag?: PNEUPAN000975000
  • symbol: SPNA45_01788
  • pan gene symbol?: —
  • synonym:
  • product: putative AraC-family transcriptional regulator

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNA45_01788 [new locus tag: SPNA45_RS09980 ]
  • symbol: SPNA45_01788
  • product: putative AraC-family transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: join(1832289..1832321,1832325..1832573)
  • length: 282
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: HE983624 join(1832289..1832321,1832325..1832573) NCBI
  • BioCyc: see SPNA45_RS09980
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0228 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    TTGTTATTTCTAGTTCATTTCCTTGAAATGCTCCTATTTGCAGATAACAAGCATCTATAT
    AAGGTTATCAAAGAAGACTTCCCCATGACTCTAAATGAATATATCTTACAATATCGCCTG
    AAACAAGCTATAGATAAGATGGCTGAATCTCCCAACTCCCCTTTAAGCGCTATCTCTGAC
    CAAGTTGGATTTTCAGACTATAAATATTTTGCCAAAGTATTTAAAAAGTATCTCCATATT
    TCCCCAAAGAAATTGAAATCACTCGGAAGAATAGTAAAATAG
    60
    120
    180
    240
    282

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNA45_01788 [new locus tag: SPNA45_RS09980 ]
  • symbol: SPNA45_01788
  • description: putative AraC-family transcriptional regulator
  • length: 93
  • theoretical pI: 10.0818
  • theoretical MW: 10975
  • GRAVY: -0.102151

⊟Function[edit | edit source]

  • TIGRFAM:
    YSIRK-targeted surface antigen transcriptional regulator (TIGR04094; HMM-score: 37.5)
    and 2 more
    4-hydroxyphenylacetate catabolism regulatory protein HpaA (TIGR02297; HMM-score: 17.5)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaD family protein (TIGR04548; HMM-score: 14.3)
  • TheSEED: data available for D39
  • PFAM:
    HTH (CL0123) HTH_18; Helix-turn-helix domain (PF12833; HMM-score: 54)
    and 3 more
    HTH_AraC; Bacterial regulatory helix-turn-helix proteins, AraC family (PF00165; HMM-score: 30.3)
    HTH_40; Helix-turn-helix domain (PF14493; HMM-score: 14.2)
    TPR (CL0020) DUF5106; Domain of unknown function (DUF5106) (PF17127; HMM-score: 13.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7781
    • Cytoplasmic Membrane Score: 0.1628
    • Cell wall & surface Score: 0.0012
    • Extracellular Score: 0.058
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.023002
    • TAT(Tat/SPI): 0.000218
    • LIPO(Sec/SPII): 0.002861
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CCM09073 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLFLVHFLEMLLFADNKHLYKVIKEDFPMTLNEYILQYRLKQAIDKMAESPNSPLSAISDQVGFSDYKYFAKVFKKYLHISPKKLKSLGRIVK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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