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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-APR-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hu15
  • locus tag: SPNHU15_RS04600 [old locus tag: SPNHU15_00987 ]
  • pan locus tag?: PNEUPAN001941000
  • symbol: SPNHU15_RS04600
  • pan gene symbol?: holB
  • synonym:
  • product: DNA polymerase III subunit delta'

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNHU15_RS04600 [old locus tag: SPNHU15_00987 ]
  • symbol: SPNHU15_RS04600
  • product: DNA polymerase III subunit delta'
  • replicon: chromosome
  • strand: +
  • coordinates: 930953..931843
  • length: 891
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP020551 (930953..931843) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0826 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAAACAAGATCAACTAAAGGCTTGGCAACCAGCTCAGTTTGACCGTTTTGTCCGTATC
    TTAGAACAAGACCAGCTCAATCACGCCTATCTCTTTTCAGGTTTCTTTGGAAGCTTGGAA
    ATGGCGCAATTTTTAGCTAAGAGCCTCTTTTGTACGGATAAAGTTGGCGTCTTACCATGT
    GAGAAATGCCGAAGTTGCAAGCTGATTGAACAGGAAGAGTTTCCAGATGTCACCTTGATT
    AAGCCAGTCAATCAGGTCATCAAGACAGAACGCATTCGGGAATTGGTGGGACAGTTTTCT
    CAAGCAGGGATTGAAAGCCAGCAACAGGTCTTTATCATCGAGCAAGCGGATAAAATGCAT
    CCCAACGCAGCCAATTCTCTGCTCAAGGTCATCGAAGAACCCCAGAGTGAAGTTTATATT
    TTCTTCTTGACTAGCGATGAGGAAAAGATGTTACCGACAATCCGAAGTCGGACTCAGATC
    TTCCACTTTAAAAAGCAAGAAGAAAAACTTATCTTACTCTTAGAACAAATGGGACTTGTT
    AAGAAAAAAGCGACTCTTTTAGCTAAGTTTAGTCAATCGCGAGCTGAAGCAGAAAAGTTG
    GCTAATCAGGCAAGTTTTTGGACCTTGGTCGATGAAAGTGAACGCCTGCTGACTTGGTTA
    GTAGCTAAGAAAAAAGAAAGTTATCTACAGGTTGCCAAATTAGCCAACTTGGCAGATGAT
    AAGGAAAAACAGGATCAGGTTTTACGGATTCTTGAAGTTCTCTGTGGGCAGGACCTCTTG
    CAGGTAAGAGTAAGAGTGATTCTACAAGATTTACTAGAAGCTAGAAAAATGTGGCAAGCT
    AATGTCAGCTTTCAAAATGCCATGGAATATCTGGTCTTGAAAGAAATATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    891

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNHU15_RS04600 [old locus tag: SPNHU15_00987 ]
  • symbol: SPNHU15_RS04600
  • description: DNA polymerase III subunit delta'
  • length: 296
  • theoretical pI: 6.77785
  • theoretical MW: 34358.8
  • GRAVY: -0.213176

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.7.7?  ExPASy
    DNA-directed DNA polymerase Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA polymerase III, delta' subunit (TIGR00678; EC 2.7.7.7; HMM-score: 191.9)
    and 2 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA polymerase III, subunit gamma and tau (TIGR02397; EC 2.7.7.7; HMM-score: 112.9)
    hopanoid biosynthesis associated protein HpnK (TIGR03473; HMM-score: 20.1)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    P-loop_NTPase (CL0023) DNA_pol3_delta2; DNA polymerase III, delta subunit (PF13177; HMM-score: 189.9)
    and 1 more
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 18.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00908
    • TAT(Tat/SPI): 0.00434
    • LIPO(Sec/SPII): 0.000586
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000806714 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKQDQLKAWQPAQFDRFVRILEQDQLNHAYLFSGFFGSLEMAQFLAKSLFCTDKVGVLPCEKCRSCKLIEQEEFPDVTLIKPVNQVIKTERIRELVGQFSQAGIESQQQVFIIEQADKMHPNAANSLLKVIEEPQSEVYIFFLTSDEEKMLPTIRSRTQIFHFKKQEEKLILLLEQMGLVKKKATLLAKFSQSRAEAEKLANQASFWTLVDESERLLTWLVAKKKESYLQVAKLANLADDKEKQDQVLRILEVLCGQDLLQVRVRVILQDLLEARKMWQANVSFQNAMEYLVLKEI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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