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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 03-APR-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hu17
  • locus tag: SPNHU17_00346 [new locus tag: SPNHU17_RS01605 ]
  • pan locus tag?: PNEUPAN001009000
  • symbol: polC
  • pan gene symbol?: polC
  • synonym:
  • product: DNA polymerase III, alpha subunit, Gram-positive type

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNHU17_00346 [new locus tag: SPNHU17_RS01605 ]
  • symbol: polC
  • product: DNA polymerase III, alpha subunit, Gram-positive type
  • replicon: chromosome
  • strand: +
  • coordinates: 299575..303966
  • length: 4392
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    4201
    4261
    4321
    4381
    ATGTCAAATAGTTTTGAAATTTTGATGAATCAATTGGGGATGCCTGCTGAAATGAGACAG
    GCTCCTGCTTTAGCACAGGCCGATATTGAGCGAGTTGTGGTCCATAAAATTAGTAAGGTA
    TGGGAATTTCATTTCGTATTTTCTAATATTTTACCGATTGAAATCTTTTTAGAAATAAAG
    AAAGGTTTGAGCGAGGAATTTTCTAAGACAGGTAATAAAGCAATTTTTGAAATCAAGGCT
    CTGTCTCAAGAATTTTCAAACCAACTCTTGCAGGCCTATTATAGAGAGGCTTTTTCTGAA
    GGGCCATGTGCTAGTCAAGGTTTTAAGTCCCTTTATCAGAATTTGCGAGTTCGTGCGGAG
    GGAAATCAGCTCTTTATTGAAGGCTCTGAGGCGATTGATAAGGAACATTTTAAGAAGAAT
    CATCTACCTAATTTAACCAAACAACTTGAAAAGTTTGGCTTTCCAACTTTTAACTGTCAA
    GTAGAGAAAAATGATGTGCTGACTCAAGAGCAGGAAGAAGCCTTTCATTCTGAAAATGAG
    CAGATTGTTCAAGCTGCCAATGAGGAAGCGCTCCGTGCTATGGAACAACTGGAACAGATG
    GCACCTCCTCCAGCGGAAGAGAAACCAGCCTTTGATTTTCAGGCCAAAAAAGCTGAAGCT
    AAACCAAAGCTGGACAAGGCGGAGATTACTCCTATGATCGAAGTCACGACGGAGGAAAAT
    CGTCTGGTCTTTGAAGGGGTTGTGTTTGATGTGGAGCAAAAAGTGACCAGAACGGGTCGT
    GTTTTAATCAACTTTAAAATGACGGACTACACTTCAAGTTTTTCTATGCAAAAGTGGGTT
    AAAAATGAGGAAGAGGCTCAGAAATTTGACCTCATCAAGAAGAATTCTTGGCTCCGAGTT
    CGTGGGAATGTAGAGATGAATAACTTCACACGCGATTTGACTATGAATGTGCAGGATGTG
    CAGGAAGTTGTTCACTATGAGCGGAAGGATTTGATGCCAGAAGGTGACCGCCGGGTTGAG
    TTTCATGCTCATACTAACATGTCGACCATGGATGCTCTACCAGAGGTTGAAGAAATCGTT
    GCGACAGCTACTAAGTGGGGACACAAGGCGGTTGCTATAACGGATCATGGGAATGTTCAG
    TCCTTCCCACATGGCTATAAGGCGGCTAAGAAAGCGGGAATTCAGCTAATCTATGGAATG
    GAAGCCAATATCGTGGAGGACCGTGTCCCTATCGTCTATAACGAAGTGGAGAGGGACTTG
    TCAGAAGCGACCTATGTGGTTTTTGACGTGGAAACAACGGGTCTATCAGCCATCTATAAT
    GATTTGATTCAGGTTGCAGCCTCTAAGATGTATAAGGGGAATGTCATTGCTGAATTTGAT
    GAATTTATCAATCCCGGGCATCCTTTGTCGGCCTTTACCACGGAGTTGACTGGAATTACA
    GATGATCATGTCAAAAATGCCAAACCACTAGAACAAGTTTTGCAAGAATTCCAAGAATTT
    TGCAAGGATACGGTCCTAGTTGCTCACAATGCGACCTTTGACGTTGGCTTTATGAATGCC
    AATTATGAGCGTCATGGTCTGCCAAAGATTAGTCAGCCAGTTATTGATACGCTAGAGTTT
    GCAAGAAACCTCTACCCTGAGTATAAGCGTCATGGTTTGGGACCGTTGACCAAGCGCTTT
    GGTGTGGCTCTAGAACATCACCACATGGCCAATTACGATGCGGAAGCTACAGGTCGCCTG
    CTTTTCATCTTTATCAAAGAGGTGGCAGAAAAACATGGTGTGACCGATTTAGCTAGACTC
    AACATTGATTTGATTAGTCCAGATTCTTATAAAAAAGCTCGGATTAAGCATGCGACCATT
    TATGTCAAGAATCAGGTGGGGCTAAAAAATATCTTTAAACTGGTTTCTTTATCCAATACC
    AAGTACTTTGAAGGGGTGCCACGAATTCCGAGAACGGTTTTAGATGCCCATCGGGAGGGT
    TTGATTTTAGGCTCAGCCTGTGCAGAAGGTGAAGTTTTTGATGCGGTTGTTTCCCAAGGT
    GTGGATGCGGCGGTTGAGGTGGCCAAGTATTATGACTTTATCGAGGTCATGCCACCAGCT
    ATCTATGCTCCCTTGATTGCTAAGGAGCAGGTCAAGGATATGGAAGAACTCCAGACCATT
    ATCAAGAATTTGATAGAGGTCGGCGACCGTCTTGGCAAGCCCGTTTTGGCTACGGGAAAT
    GTCCACTATATCGAACCAGAAGAAGAGATTTACCGTGAAATTATCGTCCGCAGTTTGGGC
    CAAGGAGCTATGATTAACCGAACTATCGGTCATGGTGAACATGCCCAACCGGCACCGCTT
    CCAAAGGCTCATTTTAGAACGACTAATGAGATGTTGGATGAATTTGCCTTCTTGGGAGAG
    GAATTAGCTCGCAAATTGGTTATTGAAAACACCAATGCCTTGGCAGATATCTTTGAACCT
    GTTGAGGTTGTTAAGGGGGACTTGTATACGCCTTTCATCGACAAGGCTGAAGAAACAGTT
    GCCGAGTTGACCTATAAGAAAGCTTTTGAGATTTATGGAAATCCGCTGCCAGATATCGTT
    GATTTGCGGATTGAAAAAGAACTAACCTCTATTCTGGGGAATGGATTTGCCGTGATTTAT
    CTGGCTTCCCAGATGCTAGTGCAACGTTCTAATGAACGGGGTTACCTGGTGGGTTCTCGT
    GGTTCTGTCGGATCTAGTTTCGTTGCGACCATGATTGGGATTACGGAGGTTAATCCTCTA
    TCTCCTCACTATGTCTGTGGTCAGTGTCAGTACAGCGAATTTATCACCGATGGTTCTTAT
    GGTTCAGGTTTTGATATGCCCAATAAGGACTGTCCTAAATGTGGTCACAAACTAAGTAAA
    AACGGACAGGATATTCCTTTCGAGACCTTCCTTGGTTTTGATGGAGATAAGGTTCCCGAT
    ATTGACTTGAACTTCTCGGGAGAAGACCAGCCTAGCGCCCACTTGGATGTGCGTGATATC
    TTTGGTGAGGAATATGCCTTCCGTGCAGGAACGGTTGGTACGGTGGCTGCCAAGACTGCC
    TATGGATTTGTCAAGGGTTACGAGCGAGATTATGGTAAGTTTTATCGTGATGCAGAGGTA
    GAACGCCTCGCTCAAGGTGCAGCTGGTGTCAAGCGGACGACAGGCCAACACCCGGGGGGA
    ATCGTTGTTATTCCGAACTACATGGATGTCTATGATTTCACGCCTGTTCAGTATCCAGCG
    GATGACGTGACGGCTGAATGGCAGACCACTCACTTTAACTTCCATGATATAGACGAGAAC
    GTCCTCAAACTCGATGTACTGGGACATGATGATCCGACCATGATTCGGAAACTGCAGGAT
    TTGTCAGGGATTGATCCTAATGAAATTCCTATGGATGATGAAGGTGTGATGGCCCTCTTT
    TCTGGGACGGATGTGCTAGGGGTAACCCCTGAACAAATCGGAACGCCGACAGGTATGCTG
    GGGATTCCAGAATTTGGAACCAACTTTGTACGTGGGATGGTAGATGAGACGCATCCGACG
    ACTTTTGCGGAGTTGCTTCAGCTCTCAGGTCTGTCCCACGGTACCGATGTCTGGTTGGGC
    AATGCCCAGGATTTGATTAAGCAAGGGATTGCGGATCTGTCGACCGTTATCGGTTGTCGG
    GACGACATCATGGTTTACCTCATGCATGCTGGTCTTGAACCTAAGATGGCCTTTACCATT
    ATGGAACGGGTACGTAAGGGCTTGTGGCTCAAGATTTCCGAAGAGGAACGCAATGGCTAT
    ATCGAAGCCATGAAAGCTAATAAGGTGCCAGAGTGGTATATCGAGTCCTGTGGGAAAATT
    AAGTACATGTTTCCTAAAGCCCATGCGGCAGCCTACGTTATGATGGCCTTGCGTGTGGCC
    TACTTCAAGGTTCACCATCCCATTTATTATTACTGTGCTTACTTCTCCATTCGTGCTAAG
    GCTTTTGACATCAAGACCATGGGAGCGGGCTTGGATGCTATCAAGCATAGAATGGAAGAA
    ATCTCTGAAAAACGGAAGAACAATGAAGCCTCTAATGTGGAAATTGATCTCTATACAACT
    CTTGAGATTGTCAATGAGATGTGGGAACGAGGTTTCAAGTTTGGAAAACTCGATCTCTAC
    CGTAGTCAGGCGACAGAGTTCCTTATCGATGGGGATACCCTCATTCCGCCATTTGTAGCA
    ATGGATGGTCTGGGAGAGAACGTTGCTAAGCAGTTAGTTCGAGCGCGTGAAGAGGGAGAA
    TTCCTGTCTAAAACAGAACTACGCAAACGTGGTGGGCTCTCATCAACCTTGGTTGAAAAG
    ATGGATGAAATGGGTATTCTTGGAAATATGCCAGAGGATAACCAGTTGAGTTTGTTTGAT
    GAGTTGTTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3300
    3360
    3420
    3480
    3540
    3600
    3660
    3720
    3780
    3840
    3900
    3960
    4020
    4080
    4140
    4200
    4260
    4320
    4380
    4392

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNHU17_00346 [new locus tag: SPNHU17_RS01605 ]
  • symbol: PolC
  • description: DNA polymerase III, alpha subunit, Gram-positive type
  • length: 1463
  • theoretical pI: 4.84232
  • theoretical MW: 164759
  • GRAVY: -0.2892

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA polymerase III, alpha subunit, Gram-positive type (TIGR01405; EC 2.7.7.7; HMM-score: 1973.7)
    and 5 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA polymerase III, alpha subunit (TIGR00594; EC 2.7.7.7; HMM-score: 191.7)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair putative DnaQ family exonuclease/DinG family helicase (TIGR01407; HMM-score: 139.1)
    Genetic information processing DNA metabolism Degradation of DNA exonuclease, DNA polymerase III, epsilon subunit family (TIGR00573; EC 2.7.7.7; HMM-score: 131.1)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA polymerase III, epsilon subunit (TIGR01406; EC 2.7.7.7; HMM-score: 87.3)
    Genetic information processing Transcription RNA processing ribonuclease T (TIGR01298; EC 3.1.13.-; HMM-score: 29.2)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    NTP_transf (CL0260) DNA_pol3_alpha; Bacterial DNA polymerase III alpha NTPase domain (PF07733; HMM-score: 192.4)
    and 12 more
    Amidohydrolase (CL0034) PHP; PHP domain (PF02811; HMM-score: 144.7)
    RNase_H (CL0219) RNase_T; Exonuclease (PF00929; HMM-score: 119.8)
    no clan defined DNA_pol3_finger; Bacterial DNA polymerase III alpha subunit finger domain (PF17657; HMM-score: 95.2)
    DnaA_N (CL0494) DNA_pol3_a_NII; DNA polymerase III polC-type N-terminus II (PF11490; HMM-score: 80.1)
    no clan defined DNA_pol3_a_NI; DNA polymerase III polC-type N-terminus I (PF14480; HMM-score: 60.4)
    HHH (CL0198) HHH_6; Helix-hairpin-helix motif (PF14579; HMM-score: 26.3)
    HHH_3; Helix-hairpin-helix motif (PF12836; HMM-score: 19.5)
    OB (CL0021) tRNA_anti-codon; OB-fold nucleic acid binding domain (PF01336; HMM-score: 19.4)
    RNase_H (CL0219) RNase_H_2; RNase_H superfamily (PF13482; HMM-score: 17.1)
    DNA_pol_A_exo1; 3'-5' exonuclease (PF01612; HMM-score: 16.2)
    Zn_Beta_Ribbon (CL0167) Zn-ribbon_8; Zinc ribbon domain (PF09723; HMM-score: 11.9)
    RNase_H (CL0219) CAF1; CAF1 family ribonuclease (PF04857; HMM-score: 11.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9884
    • Cytoplasmic Membrane Score: 0.0011
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0102
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005022
    • TAT(Tat/SPI): 0.000821
    • LIPO(Sec/SPII): 0.000524
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ARD33962 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MSNSFEILMNQLGMPAEMRQAPALAQADIERVVVHKISKVWEFHFVFSNILPIEIFLEIKKGLSEEFSKTGNKAIFEIKALSQEFSNQLLQAYYREAFSEGPCASQGFKSLYQNLRVRAEGNQLFIEGSEAIDKEHFKKNHLPNLTKQLEKFGFPTFNCQVEKNDVLTQEQEEAFHSENEQIVQAANEEALRAMEQLEQMAPPPAEEKPAFDFQAKKAEAKPKLDKAEITPMIEVTTEENRLVFEGVVFDVEQKVTRTGRVLINFKMTDYTSSFSMQKWVKNEEEAQKFDLIKKNSWLRVRGNVEMNNFTRDLTMNVQDVQEVVHYERKDLMPEGDRRVEFHAHTNMSTMDALPEVEEIVATATKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIYGMEANIVEDRVPIVYNEVERDLSEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTKYFEGVPRIPRTVLDAHREGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYDFIEVMPPAIYAPLIAKEQVKDMEELQTIIKNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALADIFEPVEVVKGDLYTPFIDKAEETVAELTYKKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVGSRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFVKGYERDYGKFYRDAEVERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDENVLKLDVLGHDDPTMIRKLQDLSGIDPNEIPMDDEGVMALFSGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEERNGYIEAMKANKVPEWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKAFDIKTMGAGLDAIKHRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKRGGLSSTLVEKMDEMGILGNMPEDNQLSLFDELF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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