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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 03-APR-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hu17
  • locus tag: SPNHU17_00432 [new locus tag: SPNHU17_RS02005 ]
  • pan locus tag?: PNEUPAN001202000
  • symbol: SPNHU17_00432
  • pan gene symbol?: eng
  • synonym:
  • product: endo-alpha-N-acetylgalactosaminidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNHU17_00432 [new locus tag: SPNHU17_RS02005 ]
  • symbol: SPNHU17_00432
  • product: endo-alpha-N-acetylgalactosaminidase
  • replicon: chromosome
  • strand: +
  • coordinates: 382929..388160
  • length: 5232
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    4201
    4261
    4321
    4381
    4441
    4501
    4561
    4621
    4681
    4741
    4801
    4861
    4921
    4981
    5041
    5101
    5161
    5221
    ATGATTGGAGCTGCATTCTTTGGGACAAGTCCGGTTCTTGCAGATAGCGTGCAGTCTGGT
    TCCACGGCGAACTTACCAGCTGATTTAGCTACTGCTCTTGCAACAGCAAAAGAGAATGAT
    GGGCGTGATTTTGAAGCGCCTAAGGTGGGAGAAGACCAAGGTTCTCCAGAAGTTACAGAT
    GGACCTAAGACAGAAGAAGAACTATTAGCACTTGAAAAAGAAAAACCGGCTGAAGAAAAA
    CCAAAAGAGGATAAACCTGCAGCTGCTAAACCTGAAACACCTAAGACGGTAACCCCTGAA
    TGGCAAACGGTAGCGAATAAAGAGCAACAAGGAACAGTCACTATCCGAGAAGAAAAAGGT
    GTCCGCTACAACCAACTATCCTCAACTGCTCAAAATGATAACGCAGGCAAACCAGCCCTG
    TTTGAAAAGAAGGGCTTGACCGTTGATGCCAATGGAAATGCAACTGTTGATTTAACCTTC
    AAAGATGATTCTGAAAAGGGCAAATCACGCTTTGGTGTCTTTTTGAAATTTAAAGATACC
    AAGAATAATGTTTTTGTCGGTTATGACAAGGATGGCTGGTTCTGGGAGTATAAATCTCCA
    ACAACTAGCACTTGGTATAGAGGTAGTCGTGTTGCTGCTCCTGAAACAGGATCAACAAAC
    CGTCTCTCTATCACTCTCAAGTCAGACGGTCAGCTAAATGCCAGCAATAATGATGTCAAT
    CTCTTTGACACAGTGACTCTACCAGCTGCGGTCAATGACCATCTTAAAAATGAGAAGAAG
    ATTCTTCTCAAGGCGGGCTCTTATGACGATGAGCGAACAGTTGTTAGCGTTAAAACGGAT
    AACCAAGAGGGGGTAAAAACAGAGGATACCCCTGCTGAAAAAGAAACAGGTCCTGAAGTT
    GATGATAGCAAGGTGACTTATGACACGATTCAGTCTAAGGTCCTCAAAGCAGTGATTGAC
    CAAGCCTTCCCTCGTGTCAAGGAATACACCTTGAATGGACATACTTTGCCAGGACAGGTG
    CAACAGTTCAACCAAGTCTTTATCAATAACCACCGAATCACCCCTGAAGTCACTTATAAG
    AAAATCAATGAGACAACAGCAGAGTACTTGATGAAGCTTCGCGATGATGCTCACTTAATC
    AATGCGGAAATGACAGTACGCTTGCAAGTTGTGGACAATCAATTGCACTTTGATGTGACC
    AAGATTGTCAACCACAATCAAGTCACTCCAGGTCAAAAGATCGATGACGAAAGAAAACTA
    CTTTCTTCTATTAGTTTCCTCGGCAATGCTTTAGTCTCTGTTTCTAGTGATCAAACTGGT
    GCTAAGTTTGATGGGGCAACCATGTCAAACAATACGCATGTCAGCGGAGATGATCATATC
    GATGTAACTAATCCAATGAAGGATTTGGCTAAGGGTTACATGTATGGATTTGTTTCTACA
    GATAAGCTTGCTGCTGGTGTTTGGAGTAACTCTCAAAATAGCTATGGTGGTGGTTCGAAT
    GACTGGACTCGTTTGACAGCTTATAAAGAAACAGTCGGAAATGCCAACTATGTAGGAATC
    CACAGCTCTGAATGGCAATGGGAAAAAGCTTATAAGGGCATTGTTTTCCCAGAATACACG
    AAGGAACTTCCAAGTGCTAAGGTTGTTATCACTGAAGATGCCAATGCAGACAAGAAAGTT
    GATTGGCAAGATGGTGCCATTGCTTATCGTAGCATTATGAACAATCCTCAAGGTTGGGAA
    AAAGTTAAGGATATCACAGCTTACCGTATCGCGATGAACTTTGGTTCTCAAGCACAAAAT
    CCATTCCTTATGACCTTGGATGGTATCAAGAAAATCAATCTCCACACAGATGGTCTTGGG
    CAAGGTGTTCTCCTTAAAGGATATGGTAGCGAAGGCCATGACTCTGGTCACTTGAACTAT
    GCTGATATTGGTAAGCGTATCGGTGGTGTCGAAGACTTCAAGACCCTAATTGAGAAGGCT
    AAGAAATATGGAGCTCATCTAGGTATCCACGTTAACGCTTCAGAAACTTATCCTGAGTCT
    AAATACTTCAATGAAAAAATTCTCCGTAAGAATCCAGATGGAAGCTATAGCTATGGTTGG
    AACTGGCTAGATCAAGGTATCAACATTGATGCTGCCTATGACCTAGCTCATGGTCGTTTG
    GCACGTTGGGAAGATTTGAAGAAAAAACTTGGTGACGGTCTCGACTTTATCTATGTGGAC
    GTTTGGGGTAATGGTCAATCAGGTGATAACGGTGCCTGGGCTACCCACGTTCTTGCTAAA
    GAAATTAACAAACAAGGCTGGCGCTTTGCGATCGAGTGGGGCCATGGTGGTGAGTACGAC
    TCTACCTTCCATCACTGGGCAGCTGACTTGACCTACGGTGGCTACACCAATAAAGGTATC
    AACAGTGCCATCACCCGCTTTATCCGTAACCACCAAAAAGATGCTTGGGTTGGGGACTAC
    AGAAGTTATGGTGGTGCAGCCAACTATCCACTGCTAGGTGGCTACAGCATGAAAGACTTT
    GAAGGCTGGCAAGGAAGAAGTGACTACAATGGCTATGTAACCAACTTATTTGCCCATGAC
    GTCATGACTAAGTACTTCCAACACTTCACTGTAAGTAAATGGGAAAATGGTACACCGGTG
    ACTATGACCGATAACGGTAGCACCTATAAATGGACTCCAGAAATGCGAGTGGAATTGGTA
    GATGCTGACAATAATAAAGTAGTTGTAACTCGTAAGTCAAATGATGTCAATAGTCCACAA
    TATCGCGAACGTACAGTAACTCTCAACGGACGTGTCATCCAAGATGGTTCAGCTTACTTG
    ACTCCTTGGAACTGGGATGCAAATGGTAAGAAACTTTCTACTGATAAGGAAAAGATGTAC
    TACTTCAATACGCAGGCCGGTGCAACAACTTGGACCCTTCCAAGCGATTGGGCAAAGAGC
    AAGGTTTACCTTTACAAGCTAACTGACCAAGGTAAGACAGAAGAGCAAGAACTAGCTGTA
    AAAGATGGTAAAATTACCCTAGATCTTCTAGCAAATCAACCATACGTTCTCTATCGTTCG
    AAACAAACCAATCCTGAAATGTCATGGAGTGAAGGCATGCACATCTATGACCAAGGATTT
    AATAGCGGTACTTTGAAACATTGGACCATTTCAGGTGATGCTTCTAAGGCAGAAATTGTC
    AAGTCTCAAGGGGCAAACGATATGCTTCGTATTCAAGGAAACAAAGAAAAAGTTAGTCTC
    ACTCAGAAATTAACTGGCTTGAAACCAAATACTAAGTATGCCGTTTATGTCGGTGTCGAT
    AACCGTAGTAATGCCAAGGCAAGTATCACTGTGAATACTGGTGAAAAAGAAGTGACTACT
    TATACCAATAAGTCTCTCGCCCTCAACTATGTAAAGGCCTACGCCCACAATACACGTCGT
    AACAATGCTACAGTTGACGATACAAGTTACTTCCAAAACATGTACGCCTTCTTTACAACT
    GGATCGGACGTCTCAAATGTTACTCTGACATTGAGTCGTGAAGCTGGTGATCAAGCAACT
    TACTTTGATGAAATTCGTACCTTTGAAAACAATTCAAGCATGTATGGAGACAAGCATGAT
    ACAGGTAAAGGCACCTTCAAGCAAGACTTTGAAAATGTTGCTCAGGGTATCTTCCCATTT
    GTAGTGGGTGGTGTCGAAGGTGTCGAAGATAACCGCACTCACTTGTCTGAAAAACACGAT
    CCATATACACAACGTGGTTGGAATGGTAAGAAAGTCGATGATGTTATCGAAGGAAATTGG
    TCACTCAAGACAAATGGACTAGTGAGCCGTCGTAACTTGGTTTACCAAACTATTCCGCAA
    AACTTCCGTTTTGAAGCAGGTAAGACCTACCGTGTAACCTTTGAATACGAAGCAGGTTCA
    GACAATACCTATGCTTTTGTAGTCGGTAAGGGAAAATTCCAGTCAGGTCGTCGTGGTACT
    CAAGCAAGCAACTTGGAAATGCATGAATTGCCAAATACTTGGACAGATTCTAAGAAAGCC
    AAGAAGGCAACCTTCCTCGTGACAGGTGCAGAAACAGGGGATACTTGGGTAGGTATCTAC
    TCAACTGGAAATGCAAGTAATACTCGTGGTGATTCTGGTGGAAATGCCAACTTCCGTGGT
    TATAACGACTTCATGATGGATAATCTTCAAATCGAAGAAATTACCCTAACAGGTAAGATG
    TTGACAGAAAATGCTCTGAAGAACTACTTGCCAACGGTTGCCATGACTAACTACACCAAA
    GAGTCTATGGATGCTTTGAAAGAGGCGGTCTTTAACCTCAGTCAGGCCGATGATGATATC
    AGTGTGGAAGAAGCGCGTGCAGAGATTGCCAAGATTGAAGCCTTGAAGAATGCTTTGGTT
    CAGAAGAAAACGGCTTTGGTAGCAGATGACTTTGCAAGTCTTACAGCTCCTGCTCAGGCT
    CAAGAAGGTCTTGCAAATGCCTTTGATGGAAACTTATCTAGTTTATGGCATACATCATGG
    GGCGGAGGAGATGTAGGCAAGCCTGCAACCATGGTCTTGAAAGAACCAACTGAAATCACT
    GGACTTCGTTACGTTCCACGTGGATCAGGTTCAAATGGTAACTTGCGTGATGTGAAACTT
    GTTGTGACAGATGAGTCTGGCAAGGAGCATACCTTTACTGCAACTGATTGGCCAGATAAC
    AATAAGCCAAAAGACATTGATTTTGGTAAGACAATTAAGGCTAAGAAAATTGTCCTTACA
    GGTACTAAGACTTACGGAGATGGTGGCGATAAATACCAATCTGCAGCGGAACTCATCTTT
    ACTCGTCCACAGGTAGCAGAAACACCTCTTGACTTGTCAGGCTATGAAGCAACTTTGGCT
    AAAGCTCAGAAATTAACAGACAAAGACAATCAAGAGGAAGTAGCTAGTGTTCAGGCAAGC
    ATGAAATATGCGACGGATAACCATCTCTTGACGGAAAGAATGGTGGAATACTTTGCAGAT
    TATCTCAACCAATTAAAAGATTCTGCTACGAAACCAGATGCTCCAACTGTAGAGAAACCT
    GAGTTTAAACTTAGCTCTATAGTTTCCGATCAAGGTAAGACGCCAGATTATAAGCAAGAA
    ATAGCTAGACCAGAAACACCTGAACAAATCTTGCCAGCAACAGGTGAGAGTCAATCTGAC
    ACATCCCTCTTCCTAGCAAGTGTTAGTCTAGCCCTATCTGCTCTCTTTGTAGTAAAAACG
    AAGAAAGACTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
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    1020
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    3180
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    3420
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    3900
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    4020
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    4140
    4200
    4260
    4320
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    4440
    4500
    4560
    4620
    4680
    4740
    4800
    4860
    4920
    4980
    5040
    5100
    5160
    5220
    5232

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNHU17_00432 [new locus tag: SPNHU17_RS02005 ]
  • symbol: SPNHU17_00432
  • description: endo-alpha-N-acetylgalactosaminidase
  • length: 1743
  • theoretical pI: 5.71194
  • theoretical MW: 193352
  • GRAVY: -0.667355

⊟Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 19.6)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    Glyco_hydro_tim (CL0058) Glyco_hydro_101; Endo-alpha-N-acetylgalactosaminidase (PF12905; HMM-score: 413.7)
    and 8 more
    Gal_mutarotase (CL0103) Gal_mutarotas_3; Galactose mutarotase-like fold domain (PF18080; HMM-score: 296.1)
    Concanavalin (CL0004) GalBD_like; Galactose-binding domain-like (PF17974; HMM-score: 295)
    GBD (CL0202) GH101_N; Endo-alpha-N-acetylgalactosaminidase N-terminal (PF17995; HMM-score: 273)
    GHD (CL0369) Glyco_hyd_101C; Glycosyl hydrolase 101 beta sandwich domain (PF17451; HMM-score: 145.5)
    GBD (CL0202) F5_F8_type_C; F5/8 type C domain (PF00754; HMM-score: 46.8)
    no clan defined Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 16.7)
    WW (CL0680) WW; WW domain (PF00397; HMM-score: 15.3)
    E-set (CL0159) Pur_ac_phosph_N; Purple acid Phosphatase, N-terminal domain (PF16656; HMM-score: 9.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 10
    • Extracellular Score: 0
    • Internal Helices: 0
  • DeepLocPro: Cell wall & surface
    • Cytoplasmic Score: 0.0003
    • Cytoplasmic Membrane Score: 0.0126
    • Cell wall & surface Score: 0.6484
    • Extracellular Score: 0.3386
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.188187
    • TAT(Tat/SPI): 0.039169
    • LIPO(Sec/SPII): 0.028437
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ARD34045 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MIGAAFFGTSPVLADSVQSGSTANLPADLATALATAKENDGRDFEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAEEKPKEDKPAAAKPETPKTVTPEWQTVANKEQQGTVTIREEKGVRYNQLSSTAQNDNAGKPALFEKKGLTVDANGNATVDLTFKDDSEKGKSRFGVFLKFKDTKNNVFVGYDKDGWFWEYKSPTTSTWYRGSRVAAPETGSTNRLSITLKSDGQLNASNNDVNLFDTVTLPAAVNDHLKNEKKILLKAGSYDDERTVVSVKTDNQEGVKTEDTPAEKETGPEVDDSKVTYDTIQSKVLKAVIDQAFPRVKEYTLNGHTLPGQVQQFNQVFINNHRITPEVTYKKINETTAEYLMKLRDDAHLINAEMTVRLQVVDNQLHFDVTKIVNHNQVTPGQKIDDERKLLSSISFLGNALVSVSSDQTGAKFDGATMSNNTHVSGDDHIDVTNPMKDLAKGYMYGFVSTDKLAAGVWSNSQNSYGGGSNDWTRLTAYKETVGNANYVGIHSSEWQWEKAYKGIVFPEYTKELPSAKVVITEDANADKKVDWQDGAIAYRSIMNNPQGWEKVKDITAYRIAMNFGSQAQNPFLMTLDGIKKINLHTDGLGQGVLLKGYGSEGHDSGHLNYADIGKRIGGVEDFKTLIEKAKKYGAHLGIHVNASETYPESKYFNEKILRKNPDGSYSYGWNWLDQGINIDAAYDLAHGRLARWEDLKKKLGDGLDFIYVDVWGNGQSGDNGAWATHVLAKEINKQGWRFAIEWGHGGEYDSTFHHWAADLTYGGYTNKGINSAITRFIRNHQKDAWVGDYRSYGGAANYPLLGGYSMKDFEGWQGRSDYNGYVTNLFAHDVMTKYFQHFTVSKWENGTPVTMTDNGSTYKWTPEMRVELVDADNNKVVVTRKSNDVNSPQYRERTVTLNGRVIQDGSAYLTPWNWDANGKKLSTDKEKMYYFNTQAGATTWTLPSDWAKSKVYLYKLTDQGKTEEQELAVKDGKITLDLLANQPYVLYRSKQTNPEMSWSEGMHIYDQGFNSGTLKHWTISGDASKAEIVKSQGANDMLRIQGNKEKVSLTQKLTGLKPNTKYAVYVGVDNRSNAKASITVNTGEKEVTTYTNKSLALNYVKAYAHNTRRNNATVDDTSYFQNMYAFFTTGSDVSNVTLTLSREAGDQATYFDEIRTFENNSSMYGDKHDTGKGTFKQDFENVAQGIFPFVVGGVEGVEDNRTHLSEKHDPYTQRGWNGKKVDDVIEGNWSLKTNGLVSRRNLVYQTIPQNFRFEAGKTYRVTFEYEAGSDNTYAFVVGKGKFQSGRRGTQASNLEMHELPNTWTDSKKAKKATFLVTGAETGDTWVGIYSTGNASNTRGDSGGNANFRGYNDFMMDNLQIEEITLTGKMLTENALKNYLPTVAMTNYTKESMDALKEAVFNLSQADDDISVEEARAEIAKIEALKNALVQKKTALVADDFASLTAPAQAQEGLANAFDGNLSSLWHTSWGGGDVGKPATMVLKEPTEITGLRYVPRGSGSNGNLRDVKLVVTDESGKEHTFTATDWPDNNKPKDIDFGKTIKAKKIVLTGTKTYGDGGDKYQSAAELIFTRPQVAETPLDLSGYEATLAKAQKLTDKDNQEEVASVQASMKYATDNHLLTERMVEYFADYLNQLKDSATKPDAPTVEKPEFKLSSIVSDQGKTPDYKQEIARPETPEQILPATGESQSDTSLFLASVSLALSALFVVKTKKD

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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