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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 03-APR-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hu17
- locus tag: SPNHU17_01050 [new locus tag: SPNHU17_RS10965 ]
- pan locus tag?: PNEUPAN002024000
- symbol: SPNHU17_01050
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNHU17_01050 [new locus tag: SPNHU17_RS10965 ]
- symbol: SPNHU17_01050
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 967662..968072
- length: 411
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP020549 (967662..968072) NCBI
- BioCyc: see SPNHU17_RS10965
- MicrobesOnline:
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
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241
301
361TTGTACTCTATCAAAAACTCTACGATATTCTCATGTCGCTTAGAAAGTAATAATGGATCT
GATGCGGACTTTGATAAGGTGGATGCATTATTAGATCAACTTTCTGCTAATAGTAAAGAC
AAAACAGCTTTACTTGAATCGACAAAAGCTATTCTAGTTTTGAATCATCAAATCCAGTCA
AAAGCTAGCGCAAGTGAAGAAACAAGTCCAGCAAGAAATGCTGAAGCAAATGGTGATAAC
ACCAGTGCTGAGAACCAACCAAACGCAACTGCAGAATCTAACATTGAAACTGCTAGCGAC
GAAAACAAACCAAGCAATACAAGAGATTCTAAACCTGCTGAATCAACTTCAGAAAATAAA
ACAACAGAATCTTCTACAACTACTGGAAATCAAGAAAAACCAGTAGAATAA60
120
180
240
300
360
411
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNHU17_01050 [new locus tag: SPNHU17_RS10965 ]
- symbol: SPNHU17_01050
- description: hypothetical protein
- length: 136
- theoretical pI: 4.23096
- theoretical MW: 14528.3
- GRAVY: -1.03529
⊟Function[edit | edit source]
- TIGRFAM: Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin cobaltochelatase, CobT subunit (TIGR01651; EC 6.6.1.2; HMM-score: 7.2)Transport and binding proteins Anions anion exchange protein (TIGR00834; HMM-score: 6.5)
- TheSEED: data available for D39, TIGR4
- PFAM: PTase-anion_tr (CL0340) Band_3_cyto; Band 3 cytoplasmic domain (PF07565; HMM-score: 12.1)no clan defined CobT; Cobalamin biosynthesis protein CobT (PF06213; HMM-score: 11.7)GAGA_bind; GAGA binding protein-like family (PF06217; HMM-score: 11.2)and 3 moreEapp_C; E2F-associated phosphoprotein (PF10238; HMM-score: 8)RR_TM4-6; Ryanodine Receptor TM 4-6 (PF06459; HMM-score: 7.6)Peptidase_AD (CL0130) Presenilin; Presenilin (PF01080; HMM-score: 5.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.039
- Cytoplasmic Membrane Score: 0.0091
- Cell wall & surface Score: 0.0032
- Extracellular Score: 0.9488
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008811
- TAT(Tat/SPI): 0.007091
- LIPO(Sec/SPII): 0.001448
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ARD34640 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MYSIKNSTIFSCRLESNNGSDADFDKVDALLDQLSANSKDKTALLESTKAILVLNHQIQSKASASEETSPARNAEANGDNTSAENQPNATAESNIETASDENKPSNTRDSKPAESTSENKTTESSTTTGNQEKPVE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]