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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 03-APR-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Hu17
  • locus tag: SPNHU17_01185 [new locus tag: SPNHU17_RS05495 ]
  • pan locus tag?: PNEUPAN002181000
  • symbol: SPNHU17_01185
  • pan gene symbol?: —
  • synonym:
  • product: SNF2 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNHU17_01185 [new locus tag: SPNHU17_RS05495 ]
  • symbol: SPNHU17_01185
  • product: SNF2 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1098437..1103026
  • length: 4590
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP020549 (1098437..1103026) NCBI
  • BioCyc: see SPNHU17_RS05495
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

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    121
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    481
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    1021
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    1381
    1441
    1501
    1561
    1621
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    1801
    1861
    1921
    1981
    2041
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    2521
    2581
    2641
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    2821
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    2941
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    3181
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    4441
    4501
    4561
    ATGGAAGTAATGCAATTATTGGCTATGTTTCGTGGAACAATTCCAAAAGATGGAGAGAAA
    ATGGACCTATTTCTTCGCTATCAGGCGCAACATTTTGATGAGAAATGGCAGGACTTGGTA
    GAGAGTTTTTTGACTGAAGAGGGCAAGATAGAAGAGATGCCTCGTGTCTATTCTTTTGAT
    CAAGATATTGTTTCTTTCCTAGAGGCTAGTTCTGAAAATAATGACCAAGATTTAGAAAGT
    TACACAAGAACTTTTGGACAAGCGGGTCTAGATAAATTATCTCAATTAAGCAATTGGGAG
    AAAAACTTGGTTCTAGAAGTCGCAACCTATAACCTTTTCACTCGATTTTACAACCAATCT
    GAAAAAGAGAAGCTAACACCATTAAGTGAGCTTGTATGTCATCAGAATCAGGAAGTTAAT
    TTAGTCAACGTCTATCGAGTTGCGAATAATCTATCTGACCGTATTAGTAGAGATATAGAG
    GAATTTCTTCTAATGGTTGATTCCAAAGAACTAGAAAAAGAGGTTCTTGAGATTCATTTT
    GAAGAAAAAGAGGGAGATGTTCTAGCCTATTTGGGTTCTGAATTAGTGGCTACTTTAGAT
    ACCGTTACGGATCTTGTCCATCATGAAGAAAACTACCAACAACTCCCACTGACACAAAAG
    TTGAAGATTATTACTCATTTTGATGATGTAAAAGCTAGAAGCGAAAAGTCTAAGCAAGTA
    GAGGAATCCTTATCTCCTTCAACTGATATTGAACAGGAAATGGAAAAAACTAACTCCTTT
    TCTAATGTCGATAAAATTGTAGAAGAAGCTTTGAGGGAATATCCAATCGGTTCACAAGTA
    AGTTATAAAGGACAAGTATTTCAGTTGGTTTCGATTGAAAATGCACACTTAAATGACTTA
    GTTCGCCTAGAGTTATTCAATAATTCCAACCAGTTATTTGAAGAGAATCCTATCTTATAC
    TTGAGCAGTTTGGAAGAGATTGAACAAGTATTGTCTCATGTAGAACTTGAAAAAGAAGGT
    TCAGAGATTGAGATTGATTCATCAAGTGAAAGTCAGGAAATAGATTTGTTTTCCTATCTG
    GATGAAGAAAATGAAAAGGAAAAAGATAAGGATAAGGAAACAAAACATTTAATTTCAGGT
    ATAGAAGAGACGGATGTCCCTGTTCAAGATTTTGTTTTTCCAGATGATTTAGAGGACTTT
    TATCCTAAGACAAATCGAGAAAAAATTGAAACGAATATCGCCGCAATTGAACTTGTTAAA
    AGATTAGAAAAAGAGGGACAACAAGCAAGTCCAGAAGAACAAGAACTAATAGCCAAGTAT
    GTCGGCTGGGGTGGTCTTGCTAATGAATTTTTTGATGAACTCAATCCAAAGTATGAGGCA
    GAACGTTTAACTCTTAAGAGCTTAGTAAGTAAATCAGAATACTCTACCATGAAACAAAGT
    TCTCTCACAGCCTATTATACAGACCCAATGATTATTCGCCAGATTTGGCAAAAATTACTG
    GATGATGGTTTTGAGGGAGGAAGGATATTAGATCCTTCTATGGGAACTGGGAACTTCTTT
    GCGGCGATGCCTAGAAGTATACGAGCTAAATCAGAACTCTATGGGGTTGAATTAGACAGT
    GTGACAGGCGCAATCGCAAAACAACTCCACCCCAATACCCATATTGAAGTGCGAGGATTT
    GAAGAAGTGCCCTATCAAAATAATAGTTTTGATTTAGTCTTAACGAATGTTCCGTTTGGA
    AATTTTCGCATTGCCGATAAAAACTATGATAAACCTTATATGATTCATGATTACTTTGTC
    AAACACTCACTTGATTTAGTAAGAGATGGAGGACAAGTTTCGATTATCTCTTCTATTGGC
    ACAATGGATAAACGGACAGATAATGTCTTACAAGAGATTAAATCCAACACTCATTTTTTA
    GGGGGAGTTCGTTTGCCGGATACGGCTTTTAAAAGGATTGCAGGTACTCGAGTGACCACA
    GACCTCCTCTTCTTTCAAAAGGATCAAGCAAAGAATCTTAATGAAGATGAGCTTGTCTTT
    AGTGGCTCTATTCCCTTTGAGGAGGATAAGCGTGTCTGGATCAATCCTTATTTTGATGGG
    AAATACAATACACAAGTTTTGGGTGAATATGAGGTACGTAATTTTAATGGAGGAACTCTC
    AATGTTAAGGGGGGTTCAGAAACATTATCTACTGACATAATGAAAGCATTAGAGAATGTG
    GAAGCACCTAAACAAATTGACAATTCTTTGAAAGCACCTGTTTTTATCCAAGAAGAAGTG
    GATAATTCTATCCCAAGTCATATACGTGAGGACTTAGCGCTCTATTCTTTTGGATATGAG
    GGAAATCAAATTTATTACCGAGATACGCATGGTATTCGAAAAAGTTCAAAAGTAGACGAA
    ATTAGTTATTATGTAGACGAGAAGGGAGATTTTAAAACCTGGGACAGTTCTTTGTCTGAA
    CATAAAATAGATCGATTCGTACAACTTCATTTGACAGATGAGGAAGCACTAGATGTTTAC
    AAGTCAGAAGAAGCGAGTAAAAGAGGGAAATATAAGGGCTTGTTCAAAAAAACTGTATTT
    TATGAAAGCCCCTTATCGGATAAGGATATTAGTCGTATTAAGGGCATGGTTGATTTGAGA
    GAGACCTATCAAGCCTTAATTGAAATTCAACGCCATCCAGATTATAGTCGAACAGATTTT
    CAGGTATTACTTAGTAAACTCAATCATGACTATGACCGCTTTGTAAGTCAATTTGGATAC
    TTGAATGCCTCCGTTAATCGGAACTTATTTGATAGTGACGATAAGTATTCTTTACTAGCA
    AGTTTAGAAGATGAATACATTGATTCTAAAGATCAGAAAGTAAAATATAAAAAATCTTTA
    GCCTTTGAGAAAGCATTGGTTAGGCCAGAGAGAGTGATTGCAAGAGTTTCAACGGCTCTA
    GATGCCTTAAACTCTAGTTTATCGGATGGTAGAGGGGTTGATTTAGATTATATGGTATCA
    ATTTATCCCGAACATAGCCAAGCTGCTATTTTAGATGAGTTAGGTGACCAGATTTTAATA
    GATCCAGAAAGCTATTTAAGAGGGGAAAGAAAATATCTTTCTAAGAACCAGTTTTTATCA
    GGAGACATTCTCAATAAGATAGAAGTAGTTCAACTGTTAGTAGAGGAAAACAATCAAGAA
    TGTGACTGGTCCCATGCTTTAGATTTGTTAGAATCTGTTCGCCCTCCAAGGATTCATCTG
    GCAGATATTGAGTTCAAAATAGGGTCACGTTGGATTCCTCAATCCGTTTATGGTAAATTT
    GCCTTTGAATGTTTTACCAATCGTGAATTTGAATTGTCTTCGCCTGATGTTGAACAAGTC
    ATTGAAGTGAATCCTGTCGATGGCCAGGTTCATTTAAGGACATCATTTGCTTATCGCTAT
    CCAAGTGCCAAAGATAGTAGTCTTGGAGTTAGTGGGTCACGTTATGATACAGGAAGAAAG
    ATTTTTGAGAATTTACTTAATTCGAACCAACCGACGATTACCATGACTGTTACGGAAGGA
    GAAAAGAAAAAGACCATCACAGATTTGGAAAAAACCTCTGTTCTAAGAGCAAAAGAGCAG
    CATTTACAAGAACTCTTTCAAGACTTTGTCTCACGGTATCCAGACGTCCAACAAGTCATT
    GAAGAAAGTTACAATCGTCTTTATAATCGAACGGTTAGTCGAGAGTATGACGGTAGCCAT
    TTAGTCATTGATGGCTTGGCTCAAAACATTAGTCTTCGTCCTCACCAAGAGAATGCCATT
    CAAAGAATCGTAGAAGAAAAAAGAGCCTTGTTAGCTCATGAGGTAGGTTCAGGAAAGACC
    TTGACCATGCTTGGTGCTGGGTTTAAATTAAAGGAGTTGGGGATGGTTCATAAGCCCTTG
    TATGTAGTGCCCTCTAGTTTGTCTGCTCAATTTGGTCAAGAAATCATGAAATTTTTCCCT
    ACTAAAAAGGTCTTTGTGATCACTAAGAAAGATTTTGTGAAGGCGAGAAGAAAACAATTT
    GTGTCACGTATTATTACAGGAGATTACGATGCCATTGTCATTGGGGATTCTCAATTTGAA
    AAAATCCCTGTCAGTAAAGAAAGACAGATGAATTATATCGAGGATAAACTCAATGAACTA
    CGAGAGATTAAAACACATTCTGAAAATAAGTATACTGTCAAAGAAGCAGAACAATCAATA
    AGTGGTCTAGAGAAACAATTGGAAGAACTCCAACGCTTTAATCGTGATAGTTTTATTGAT
    TTTGAGAACTTAGGAATTGATTTTCTCTTTGTGGATGAAGCACATCACTTTAAAAATATT
    CGTCCAATTACTGGACTTGGAAATGTAGCAGGGATTACCAATACAACCTCTAAGAAGAAC
    GTGGATATGGAAATGAAGGTTCGACAGATTCAGGAAGAACATGATTTTAAAAATATTGTC
    TTTGCGACAGGAACACCTGTTTCCAATTCTATTAGTGAGTTATATACTATGATGAACTAT
    ATTCAACCAGATATCTTAAAACGCTATCAAGTTGATTATTTTGACTCTTGGGTAGGTGTT
    TTGGAGAAATTCAAAACTCTATGGAATTAG
    60
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    4590

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNHU17_01185 [new locus tag: SPNHU17_RS05495 ]
  • symbol: SPNHU17_01185
  • description: SNF2 family protein
  • length: 1529
  • theoretical pI: 4.65164
  • theoretical MW: 176207
  • GRAVY: -0.542184

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    P-loop_NTPase (CL0023) ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 44.2)
    SNF2-rel_dom; SNF2-related domain (PF00176; HMM-score: 41.6)
    and 7 more
    NADP_Rossmann (CL0063) Methyltransf_25; Methyltransferase domain (PF13649; HMM-score: 22.9)
    Methyltransf_11; Methyltransferase domain (PF08241; HMM-score: 21.3)
    P-loop_NTPase (CL0023) DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 20.5)
    NADP_Rossmann (CL0063) Methyltransf_31; Methyltransferase domain (PF13847; HMM-score: 14.7)
    Methyltransf_23; Methyltransferase domain (PF13489; HMM-score: 12.7)
    no clan defined Gluconate_2-dh3; Gluconate 2-dehydrogenase subunit 3 (PF13618; HMM-score: 12.1)
    DUF848; Gammaherpesvirus protein of unknown function (DUF848) (PF05852; HMM-score: 7.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.6058
    • Cytoplasmic Membrane Score: 0.0737
    • Cell wall & surface Score: 0.1228
    • Extracellular Score: 0.1977
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003119
    • TAT(Tat/SPI): 0.000107
    • LIPO(Sec/SPII): 0.000384
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ARD34768 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEVMQLLAMFRGTIPKDGEKMDLFLRYQAQHFDEKWQDLVESFLTEEGKIEEMPRVYSFDQDIVSFLEASSENNDQDLESYTRTFGQAGLDKLSQLSNWEKNLVLEVATYNLFTRFYNQSEKEKLTPLSELVCHQNQEVNLVNVYRVANNLSDRISRDIEEFLLMVDSKELEKEVLEIHFEEKEGDVLAYLGSELVATLDTVTDLVHHEENYQQLPLTQKLKIITHFDDVKARSEKSKQVEESLSPSTDIEQEMEKTNSFSNVDKIVEEALREYPIGSQVSYKGQVFQLVSIENAHLNDLVRLELFNNSNQLFEENPILYLSSLEEIEQVLSHVELEKEGSEIEIDSSSESQEIDLFSYLDEENEKEKDKDKETKHLISGIEETDVPVQDFVFPDDLEDFYPKTNREKIETNIAAIELVKRLEKEGQQASPEEQELIAKYVGWGGLANEFFDELNPKYEAERLTLKSLVSKSEYSTMKQSSLTAYYTDPMIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIRAKSELYGVELDSVTGAIAKQLHPNTHIEVRGFEEVPYQNNSFDLVLTNVPFGNFRIADKNYDKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRTDNVLQEIKSNTHFLGGVRLPDTAFKRIAGTRVTTDLLFFQKDQAKNLNEDELVFSGSIPFEEDKRVWINPYFDGKYNTQVLGEYEVRNFNGGTLNVKGGSETLSTDIMKALENVEAPKQIDNSLKAPVFIQEEVDNSIPSHIREDLALYSFGYEGNQIYYRDTHGIRKSSKVDEISYYVDEKGDFKTWDSSLSEHKIDRFVQLHLTDEEALDVYKSEEASKRGKYKGLFKKTVFYESPLSDKDISRIKGMVDLRETYQALIEIQRHPDYSRTDFQVLLSKLNHDYDRFVSQFGYLNASVNRNLFDSDDKYSLLASLEDEYIDSKDQKVKYKKSLAFEKALVRPERVIARVSTALDALNSSLSDGRGVDLDYMVSIYPEHSQAAILDELGDQILIDPESYLRGERKYLSKNQFLSGDILNKIEVVQLLVEENNQECDWSHALDLLESVRPPRIHLADIEFKIGSRWIPQSVYGKFAFECFTNREFELSSPDVEQVIEVNPVDGQVHLRTSFAYRYPSAKDSSLGVSGSRYDTGRKIFENLLNSNQPTITMTVTEGEKKKTITDLEKTSVLRAKEQHLQELFQDFVSRYPDVQQVIEESYNRLYNRTVSREYDGSHLVIDGLAQNISLRPHQENAIQRIVEEKRALLAHEVGSGKTLTMLGAGFKLKELGMVHKPLYVVPSSLSAQFGQEIMKFFPTKKVFVITKKDFVKARRKQFVSRIITGDYDAIVIGDSQFEKIPVSKERQMNYIEDKLNELREIKTHSENKYTVKEAEQSISGLEKQLEELQRFNRDSFIDFENLGIDFLFVDEAHHFKNIRPITGLGNVAGITNTTSKKNVDMEMKVRQIQEEHDFKNIVFATGTPVSNSISELYTMMNYIQPDILKRYQVDYFDSWVGVLEKFKTLWN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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