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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 04-FEB-2016

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae INV200
  • locus tag: SPNINV200_11990 [new locus tag: SPNINV200_RS06400 ]
  • pan locus tag?: PNEUPAN002601000
  • symbol: SPNINV200_11990
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNINV200_11990 [new locus tag: SPNINV200_RS06400 ]
  • symbol: SPNINV200_11990
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1228298..1231909
  • length: 3612
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: FQ312029 (1228298..1231909) NCBI
  • BioCyc: see SPNINV200_RS06400
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    ATGTTGAAATACTTATCTGGAAAGGTTTTTATAATGAGTTTAAGAAATAAAATTGAGCAA
    CATATTAAAGAGCTAGAGGGAGGGAAGTTTCAAAAACTAGGTGACGCGTACCTAAGTAGA
    AAATACAATTTTAATATTGTTTCATTAGGCTCACAGGAAGGAACAGATAAAACAACTAAA
    GGGATCCCAGATTCTTACGCTGTCGAAAATGGTAAATATGTTTATATTATGTATGGCACC
    CATAAGTCTGTAATATCTAAATTAGAAGGAGACATTCAGTCAGTTAAGAAAAAAATTTTA
    GAGGAAAATATTGCTGAAGATAAAGTTGGGAGACTTATTTGTTGTCATACTTCTTCAAAT
    ATAACAATTAAACAAAAAGAAGATCTAGAAAAAATGGCTGAGCCTTATCATCTAGAATTG
    ATTGGAATTAATGAAATTGCTAATGATCTTACAAAGATAGATTTTCAATATTTAGCAAAA
    GAGTATCTATCAATCAGTGAATCTACAGAGCAAGTTTGGTCTATCAATGACTTCATAAGA
    ATTCATGATGAGAGTAAAACTAATGCTCCTATATCAAATGACTATATTGGAGATGTAAGT
    GAAATTATAAATACCATTAAATCAAGTGAAAAACGAATCTTCTTAATATCTGCTAAGCCT
    GGAACAGGGAAAACTAGATTAGCAATTGAAATTTGCTCTTTGCTGGATCGAAATAAATAT
    AACATTATTTGTGTCAAGAGCAATAATCAGGATATTTACCAAGATGTAAAACGCAATCTA
    AATTTACACAAAGAAAATATTGTTTTTATTGATGATGTTAATACTACACAAAATTATATT
    TCTACACTTGGGCTACTGAACACGACTAGTAATATTCGGTTTATTCTTACGGTACGTGAT
    TATGCTAAAAAAGATGTAATCAATAATATTAAAGTTTATGGGTACAATAATATTGAGCCA
    GAACTTATAAAAGATGATAATTTTAAGGAATTACTCAATCAATTTTCTCGAAACGATTTT
    ACCAATCAAGAAATTGAACATATAAAAACGATATCTAAAAGCAATCCGCGTATTGCAGTC
    ATTGCAGCAAAGTTATCTAGCTCTCAGGATTTGACTAATTTTAATGATGAGATTGATATT
    TTAAAAGATTACTATGAAGAAATTTTAAATAAAAACAACATTATTTATGCAGAACAAAAG
    ACTCTATTTATTTTATCTTACTTAAAAAAGATTAGACTGGAAAGTTTAGAAGAGAACCAG
    GAATTCAATAAATTACTAAAAATAACTGACATAACAAATACTGACTTTAAGAGTGCAGTG
    GAGAAGCTTCATGAAAGAGAGTTGTGTAATATTTATAACGACAAAATTGTAAAGATAGCA
    GATCAATCATTAGATGATTATATAGTTATCAAGTTTTTAATTAACAAGAAAATATCAATT
    TTAGAAATTTTACATGAGTTATATCCAGTAAACGACCAAAGAGTTGTTCAAATACTAAAT
    CAATGTTCCAATTTTATTAGGAAAGAGAGTGATTTAGAAGGCGTTTCTGATGCAGTTAAA
    TCATATTATTACAATGAAAGTAATTTTGAAAGTGATGAACTTAAAGAAAAGTTTTTAATA
    CAATTTGGAGTATTACTTCCTTTAGAAGCAATTTCACACGTTAAAAATAAAATTGATAAT
    ATAGAGTCTCAGGTTTATACAAAGACTAATTTTATTAATCAGAAGGATAAAAAGGGATCT
    ATTGAGGATTCAGTTTTAAATATTGTATTTGTAACTACACGGACAAAATATTGTAGTCAA
    ATTCTCCAATTATTGTTAAAGTACTTTGATAAAAATCCTAATAAAATTTCTGAGGTTTAT
    AGTATTCTTGAAGCAAACTACGGGTTGGTTACAGAAAGAGAATATATTGATTATACCTTA
    GCTGAAAATACCATTTCTGAACTTGCTAATCTTGATTTGACGAAAAGTTATAACCAAGAA
    TTAATCGTGACAATTTTGAAGCAGTTTCTTAAAATTGAAATCGAAAGAACAGAGGCTCAT
    GAAGAGAAATTTACTTTTGGGCGCTATAAAGTCCCGGATAGTGAAAAATTAAAACAGTAT
    CATAGAAGTATACTAAAACTTTTAGCGAATTTGTATAATATAGGGAGTTGTGAAACTAGA
    TTTTATATTGAGAAAATGCTATATGATTACAGAAGAAAAATTTTGACCTATTCAGAAAGT
    CATCGTAATACTATCTTTGGAGATTTGAGAAATATTAGGAAATTATTTTTTAATGACATT
    AAAAACTTATCTATGATTGGAGAAAAAATAGTTTATGCTTTGCATAAAGCCGAAGTGAAA
    GAAAATTTACCGATTGTTTTTGATGATTATATAATTTCTGACAGACAAAAAATATATAAT
    AATTTAACAAATCCTAACCATGCTTGGTTTTATGATGCTTCTGAAATTAAACTACAACAA
    ATTGCAAATAGCTATTCAAATGTTTGGCTTAAAATTTTTAATTTTGCAAATCAATTCAAA
    CATAGCTTATTTATGAATGACAATAACATTGAGCTAGTACTATTCAATATGTTTTTACTA
    TCAAAAAATGATAAAAAGATTAAATTTCTAAATTATATGTTTAAATCAAACTATCATTTT
    GTAAATATGAATCCGATTAGTTTTTTAGAAAATATTGAGGAAAGTTCAATGCAGTCTGTT
    ATTGTTTCCTCTCCAGAATCAGAAAAATATGAATGGCAACTTGCTTATTTAACACAACTT
    GAAAACGTTAAAAATGAAGATCTACAAACATTAAAGAGTATTCTAGAAGCTAATTCTTTA
    CCATGTTATTTTACAATTTTAAATTTTGAGAGATTGATTTTGAAAGATCCTAGTTTAAAA
    GAGTTGTTAATACAAAAAGCTGGGAATACAAATTTTGTTATTTCTGATTTTATAAGAGAA
    GAAGAGGTGCCAAAATTAATAAATCTAATTGGAGTAAAAGAGTTGAAGTTTTGGTATTTA
    ATAAATTTAGAAAATTGTCAGAATCACAGCTATAATCTTTTTCAAAAATTAGGTGAAAAA
    GATGTTGATTTTTCGGTAGAAGTATTGAAGAAAATTGATGAATTGAGAATAGGTCATTCC
    AATTTAGGATACATGGTATTACATTCTATAAGTGAATTTAGAGATAAGAAAGAAATTTAT
    AAAAAGTTTATCCGTTTTGCAATAAATAGGCCATATTACTACTACAATAATATGATTGAT
    GATATTATAAAAAATGACAGTCAGATCATATTAGAAATACTGGAGGAAACAAATAATGAG
    CAATCTGCAATTAGATTGGTCAATCTAGGTGTAGAATTTTTAGAAAACAACAATCAAAAA
    CTAATACTATTTAATCTTCTCAGAGCTAAAGGATTTGGTAAGAAGTCATTCCAAGAAATA
    CATTTTACTCCCTATTCACATTTTTATACTGGTAGTCATGTTCCGGTGTTGGAATTAGAA
    AAAGAACTCCTAGAAAGAATTAAAAAGATATTTGAAACGGGTATAGACTACATTAACTTG
    CTACTGTACTTGAATAAACTAATTGATTGCAAGCGAAAAGCTATTGAAAGAGAATTGGAA
    AAAGAGTTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3300
    3360
    3420
    3480
    3540
    3600
    3612

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNINV200_11990 [new locus tag: SPNINV200_RS06400 ]
  • symbol: SPNINV200_11990
  • description: hypothetical protein
  • length: 1203
  • theoretical pI: 6.42958
  • theoretical MW: 141080
  • GRAVY: -0.375561

⊟Function[edit | edit source]

  • TIGRFAM:
    arsenical pump-driving ATPase (TIGR04291; EC 3.6.1.-; HMM-score: 21.8)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaA regulatory inactivator Hda (TIGR03420; HMM-score: 18.4)
  • TheSEED  :
    • ATPase involved in DNA replication
  • PFAM:
    P-loop_NTPase (CL0023) ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 20)
    AAA_22; AAA domain (PF13401; HMM-score: 20)
    AAA_19; AAA domain (PF13245; HMM-score: 16.7)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 16)
    and 9 more
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 15.8)
    no clan defined DUF6610; Family of unknown function (DUF6610) (PF20314; HMM-score: 14.2)
    P-loop_NTPase (CL0023) AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 13.8)
    AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 13.6)
    AAA_11; AAA domain (PF13086; HMM-score: 13.4)
    MobB; Molybdopterin guanine dinucleotide synthesis protein B (PF03205; HMM-score: 13.2)
    CbiA; CobQ/CobB/MinD/ParA nucleotide binding domain (PF01656; HMM-score: 13.1)
    no clan defined Sod_Ni; Nickel-containing superoxide dismutase (PF09055; HMM-score: 12.6)
    P-loop_NTPase (CL0023) AAA_30; AAA domain (PF13604; HMM-score: 12.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.4601
    • Cytoplasmic Membrane Score: 0.3479
    • Cell wall & surface Score: 0.0036
    • Extracellular Score: 0.1884
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005376
    • TAT(Tat/SPI): 0.000365
    • LIPO(Sec/SPII): 0.000579
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CBW34832 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLKYLSGKVFIMSLRNKIEQHIKELEGGKFQKLGDAYLSRKYNFNIVSLGSQEGTDKTTKGIPDSYAVENGKYVYIMYGTHKSVISKLEGDIQSVKKKILEENIAEDKVGRLICCHTSSNITIKQKEDLEKMAEPYHLELIGINEIANDLTKIDFQYLAKEYLSISESTEQVWSINDFIRIHDESKTNAPISNDYIGDVSEIINTIKSSEKRIFLISAKPGTGKTRLAIEICSLLDRNKYNIICVKSNNQDIYQDVKRNLNLHKENIVFIDDVNTTQNYISTLGLLNTTSNIRFILTVRDYAKKDVINNIKVYGYNNIEPELIKDDNFKELLNQFSRNDFTNQEIEHIKTISKSNPRIAVIAAKLSSSQDLTNFNDEIDILKDYYEEILNKNNIIYAEQKTLFILSYLKKIRLESLEENQEFNKLLKITDITNTDFKSAVEKLHERELCNIYNDKIVKIADQSLDDYIVIKFLINKKISILEILHELYPVNDQRVVQILNQCSNFIRKESDLEGVSDAVKSYYYNESNFESDELKEKFLIQFGVLLPLEAISHVKNKIDNIESQVYTKTNFINQKDKKGSIEDSVLNIVFVTTRTKYCSQILQLLLKYFDKNPNKISEVYSILEANYGLVTEREYIDYTLAENTISELANLDLTKSYNQELIVTILKQFLKIEIERTEAHEEKFTFGRYKVPDSEKLKQYHRSILKLLANLYNIGSCETRFYIEKMLYDYRRKILTYSESHRNTIFGDLRNIRKLFFNDIKNLSMIGEKIVYALHKAEVKENLPIVFDDYIISDRQKIYNNLTNPNHAWFYDASEIKLQQIANSYSNVWLKIFNFANQFKHSLFMNDNNIELVLFNMFLLSKNDKKIKFLNYMFKSNYHFVNMNPISFLENIEESSMQSVIVSSPESEKYEWQLAYLTQLENVKNEDLQTLKSILEANSLPCYFTILNFERLILKDPSLKELLIQKAGNTNFVISDFIREEEVPKLINLIGVKELKFWYLINLENCQNHSYNLFQKLGEKDVDFSVEVLKKIDELRIGHSNLGYMVLHSISEFRDKKEIYKKFIRFAINRPYYYYNNMIDDIIKNDSQIILEILEETNNEQSAIRLVNLGVEFLENNNQKLILFNLLRAKGFGKKSFQEIHFTPYSHFYTGSHVPVLELEKELLERIKKIFETGIDYINLLLYLNKLIDCKRKAIERELEKEF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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