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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 26-AUG-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae OXC141
- locus tag: SPNOXC01410 [new locus tag: SPNOXC_RS00800 ]
- pan locus tag?: PNEUPAN000789000
- symbol: SPNOXC01410
- pan gene symbol?: artP_1
- synonym:
- product: putative extracellular amino acid-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNOXC01410 [new locus tag: SPNOXC_RS00800 ]
- symbol: SPNOXC01410
- product: putative extracellular amino acid-binding protein
- replicon: chromosome
- strand: +
- coordinates: 141529..142437
- length: 909
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FQ312027 (141529..142437) NCBI
- BioCyc: see SPNOXC_RS00800
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0109 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901TTGTTTCAAATTGAAAATTTTTTCAATTTAGACTTGACAAAGGATGAGTATAGGAGTATT
ATTTATACAAGCAAAAAGAATAAACATAAAGGAGGCTTTGTTATGAATAAGATGAAGAAG
GTGTTGATGACGATGTTTGGTTTAGTGATGCTCCCCCTACTATTTGCTTGTAGCAACAAT
CAATCGGCTGGAATTGAAGCCATCAAGTCCAAAGGAAAATTGGTTGTAGCTCTCAATCCA
GATTTTGCTCCATTTGAATATCAAAAAGTGGTAGATGGGAAAAATCAGATTGTGGGTTCA
GATATCGAATTAGCCAAAGCTATCGCAACAGAACTAGGTGTCGAATTGGAACTATCTCCC
ATGAGTTTTGACAATGTACTGGCTAGTGTTCAATCAGGAAAAGCCGATCTTGCCATATCT
GGTGTTTCTAAGACAGATGAACGGAGCAAGGTGTTCGATTTTTCAACTCCCTACTATACT
GCAAAAAATAAACTCATTGTCAAAAAATCTGACTTGGCCACTTATCAGTCTGTCAACGAC
TTAGCGCAGAAAAAGGTCGGAGCACAGAATGGTTCGATTCAAGAGACGATGGCGAAAGAC
TTGCTACAAAATTCTTCCCTCGTATCTCTGCCTAAAAATGGGAATTTAATCACAGATTTA
AAATCAGGACAAGTGGATGCCGTTATCTTTGAAGAACCTGTTGCCAAGGGATTTGTGGAA
AATAATCCTGATTTAGCAATCGCAGACCTCAATTTTGAAAAAGAGCAAGATGATTCCTAC
GCGGTAGCCATGAAAAAAGATAGCAAGGAATTGAAAGAGGCAGTCGATAAAACCATTCAA
AAGTTGAAGAAGTCTGGAGAATTAGACAAACTCATTGAGGATGCCTTTAAAGCGTCCATT
GAAAAATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNOXC01410 [new locus tag: SPNOXC_RS00800 ]
- symbol: SPNOXC01410
- description: putative extracellular amino acid-binding protein
- length: 302
- theoretical pI: 6.13684
- theoretical MW: 33288.1
- GRAVY: -0.271854
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Amino acids, peptides and amines lysine-arginine-ornithine-binding periplasmic protein (TIGR01096; HMM-score: 153.9)and 3 moreTransport and binding proteins Amino acids, peptides and amines ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB (TIGR02995; HMM-score: 74.8)extracellular substrate-binding orphan protein, GRRM family (TIGR04262; HMM-score: 44)quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein (TIGR03871; HMM-score: 39.5)
- TheSEED :
- Amino acid ABC transporter, amino acid-binding/permease protein
- PFAM: PBP (CL0177) SBP_bac_3; Bacterial extracellular solute-binding proteins, family 3 (PF00497; HMM-score: 202.6)and 4 moreLig_chan-Glu_bd; Ligated ion channel L-glutamate- and glycine-binding site (PF10613; HMM-score: 31.2)NMT1; NMT1/THI5 like (PF09084; HMM-score: 26.2)no clan defined PMC2NT; PMC2NT (NUC016) domain (PF08066; HMM-score: 16)PBP (CL0177) LysR_substrate; LysR substrate binding domain (PF03466; HMM-score: 12.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- SignalP: Signal peptide LIPO(Sec/SPII) length 56 aa
- SP(Sec/SPI): 0.065016
- TAT(Tat/SPI): 0.00872
- LIPO(Sec/SPII): 0.538561
- Cleavage Site: CS pos: 56-57. LFA-CS. Pr: 0.5590
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CCP29702 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MFQIENFFNLDLTKDEYRSIIYTSKKNKHKGGFVMNKMKKVLMTMFGLVMLPLLFACSNNQSAGIEAIKSKGKLVVALNPDFAPFEYQKVVDGKNQIVGSDIELAKAIATELGVELELSPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLATYQSVNDLAQKKVGAQNGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKKSGELDKLIEDAFKASIEK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0109 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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