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serotype 4
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serotype 2
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EF3030
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serotype 6B
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serotype 23F
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G54
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HU-OH
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Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
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SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 26-AUG-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae OXC141
  • locus tag: SPNOXC02160 [new locus tag: SPNOXC_RS01205 ]
  • pan locus tag?: PNEUPAN000918000
  • symbol: SPNOXC02160
  • pan gene symbol?: ypdF
  • synonym:
  • product: putative metallopeptidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNOXC02160 [new locus tag: SPNOXC_RS01205 ]
  • symbol: SPNOXC02160
  • product: putative metallopeptidase
  • replicon: chromosome
  • strand: +
  • coordinates: 214180..215241
  • length: 1062
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGATAAACGCGTACAAGCATTTCTAGCTAAAATGCAAGAAAAAGAACTAGATGGTATC
    ATCATCAACAATCTTAAAAACGTCTATTATTTGACTGGTTTTTGGGGCTCAAACGGAACA
    GTCTTTATCAGCCGTGACCGTCAGGTCTTAGTGACAGACTCTCGCTATATCATCGCAGCT
    AAGCAAGAAACCAGTGGTTTTGAGATTGTGGCTGATCGTGATGAATTGGCTGTCATTGCA
    GGAATTGTTAAGGACATGGGCTTGACTCGTATCGGTTTTGAAGATGAGATTTCAGTGTCT
    TATTACCACCGTATGCAGGCAGCTTTTGCAGGTTTGGACTTGCTTCCACAAACTCAGTTT
    GTGGAAGGTCTTCGTATGATTAAGGATGAGGCAGAGATTGCAGCGATTCGCAAGGCTTGT
    TCTATCTCAGACCAAGCTTTCCGCGATGCGCTTGACTTTATCAAACCAGGAAAAACTGAA
    ATTGAGATTGCCAACTTCCTTGATTTCCGCATGCGTGAGTTGGGAGCATCTGGCTTATCT
    TTTGATACGATCCTAGCTAGCGGTATCAATTCTTCTAAACCCCATGCCCATCCAATGCAC
    AAACCAGTGGAGTTGGGAGAAGCCATTACCATGGACTTCGGCTGTCTCTATGACCACTAT
    GTCAGTGATATGACCCGGACTATCTATCTAGGGCATGTTAGCGATGAGCAGGCAGAGATT
    TACAATACGGTTCTAAAAGCTAACCAAGCCTTGATTGACCAAGCTAAGGCAGGCTTAGGT
    TTCCGTGACTTTGACAAAATCCCTCGTGATATTATCATTGAGGCAGGTTATGGTGACTAC
    TTTACTCACGGCATTGGCCACGGTATTGGTCTGGATATCCATGAGGAACCCTACTTTAGC
    CAGACTTCTACAGAAACTATTAAGACAGGTATGGCCTTGACCGATGAACCAGGTATCTAT
    ATCGAAGGCAAATATGGCGTTCGTATCGAGGATGATATCCTGATTACAGAGACAGGTTGT
    GAATTATTGACCCTAGCTCCAAAAGAGTTGATAGTCATTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1062

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNOXC02160 [new locus tag: SPNOXC_RS01205 ]
  • symbol: SPNOXC02160
  • description: putative metallopeptidase
  • length: 353
  • theoretical pI: 4.55875
  • theoretical MW: 39342.6
  • GRAVY: -0.0796034

⊟Function[edit | edit source]

  • TIGRFAM:
    ectoine utilization protein EutD (TIGR02993; EC 3.-.-.-; HMM-score: 76)
    Genetic information processing Protein fate Protein modification and repair methionine aminopeptidase, type I (TIGR00500; EC 3.4.11.18; HMM-score: 72.4)
    and 1 more
    Genetic information processing Protein fate Protein modification and repair methionine aminopeptidase, type II (TIGR00501; EC 3.4.11.18; HMM-score: 34.5)
  • TheSEED  :
    • Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)
    Protein Metabolism Protein degradation Protein degradation  Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)
  • PFAM:
    no clan defined Peptidase_M24; Metallopeptidase family M24 (PF00557; HMM-score: 210.1)
    and 1 more
    AMP_N-like (CL0356) Creatinase_N; Creatinase/Prolidase N-terminal domain (PF01321; HMM-score: 88.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9976
    • Cytoplasmic Membrane Score: 0.0004
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.002
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00294
    • TAT(Tat/SPI): 0.00021
    • LIPO(Sec/SPII): 0.000305
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: CBW31877 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MDKRVQAFLAKMQEKELDGIIINNLKNVYYLTGFWGSNGTVFISRDRQVLVTDSRYIIAAKQETSGFEIVADRDELAVIAGIVKDMGLTRIGFEDEISVSYYHRMQAAFAGLDLLPQTQFVEGLRMIKDEAEIAAIRKACSISDQAFRDALDFIKPGKTEIEIANFLDFRMRELGASGLSFDTILASGINSSKPHAHPMHKPVELGEAITMDFGCLYDHYVSDMTRTIYLGHVSDEQAEIYNTVLKANQALIDQAKAGLGFRDFDKIPRDIIIEAGYGDYFTHGIGHGIGLDIHEEPYFSQTSTETIKTGMALTDEPGIYIEGKYGVRIEDDILITETGCELLTLAPKELIVI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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