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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 26-AUG-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae OXC141
- locus tag: SPNOXC03120 [new locus tag: SPNOXC_RS01715 ]
- pan locus tag?: PNEUPAN001034000
- symbol: rplM
- pan gene symbol?: rplM
- synonym:
- product: 50S ribosomal protein L13
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNOXC03120 [new locus tag: SPNOXC_RS01715 ]
- symbol: rplM
- product: 50S ribosomal protein L13
- replicon: chromosome
- strand: +
- coordinates: 304536..304982
- length: 447
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FQ312027 (304536..304982) NCBI
- BioCyc: see SPNOXC_RS01715
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0274 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421ATGAACAAAACAACATTTATGGCTAAACCAGGCCAAGTTGAACGTAAATGGTACGTAGTT
GACGCAACTGATGTACCACTTGGACGTCTTTCTGCAGTAGTTGCTAGCGTACTTCGCGGA
AAAAACAAACCAACATTTACACCACACACTGATACAGGTGACTTCGTGATTGTTATCAAT
GCTGAAAAAGTTAAATTGACTGGTAAAAAAGCAACTGATAAAATCTACTACACTCACTCA
AACCACCCAGGTGGATTGAAACAAATCTCTGCAGGTGAACTTCGTTCTAAAAATGCAGTA
CGTTTGATTGAGAAATCAGTTAAAGGTATGCTTCCACACAATACACTTGGACGCGCTCAA
GGTATGAAGTTGAAAGTATTTGTTGGAGCTGAGCACACTCACGCTGCACAACAACCAGAA
GTTCTTGACATTTCAGGACTTATCTAA60
120
180
240
300
360
420
447
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNOXC03120 [new locus tag: SPNOXC_RS01715 ]
- symbol: RplM
- description: 50S ribosomal protein L13
- length: 148
- theoretical pI: 10.6455
- theoretical MW: 16142.6
- GRAVY: -0.295946
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL13 (TIGR01066; HMM-score: 192.3)and 1 moreProtein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL13 (TIGR01077; HMM-score: 48.9)
- TheSEED :
- LSU ribosomal protein L13p (L13Ae)
- PFAM: no clan defined Ribosomal_L13; Ribosomal protein L13 (PF00572; HMM-score: 147.6)and 1 moreAcetyltrans (CL0257) MCD; Malonyl-CoA decarboxylase C-terminal domain (PF05292; HMM-score: 14.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.1608
- Cytoplasmic Membrane Score: 0.0001
- Cell wall & surface Score: 0
- Extracellular Score: 0.839
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.011552
- TAT(Tat/SPI): 0.0009
- LIPO(Sec/SPII): 0.00368
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CBW31972 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MNKTTFMAKPGQVERKWYVVDATDVPLGRLSAVVASVLRGKNKPTFTPHTDTGDFVIVINAEKVKLTGKKATDKIYYTHSNHPGGLKQISAGELRSKNAVRLIEKSVKGMLPHNTLGRAQGMKLKVFVGAEHTHAAQQPEVLDISGLI
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0274 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.