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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 20-DEC-2020
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae OXC141
- locus tag: SPNOXC_RS10325 [old locus tags: SPNOXC18590 SPNOXC_18590 ]
- pan locus tag?: PNEUPAN003714000
- symbol: SPNOXC_RS10325
- pan gene symbol?: malX
- synonym:
- product: extracellular solute-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPNOXC_RS10325 [old locus tags: SPNOXC18590 SPNOXC_18590 ]
- symbol: SPNOXC_RS10325
- product: extracellular solute-binding protein
- replicon: chromosome
- strand: +
- coordinates: 1900481..1901752
- length: 1272
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_017592 (1900481..1901752) NCBI
- BioCyc: SPNOXC_RS10325 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1934 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1261ATGTCATCTAAATTTATGAAGAGCACTGCGGTGCTTGGAACTGTTACACTTGCTAGCTTG
CTTTTGGTAGCTTGCGGAAGCAAAACTGCTGATAAGCCTGCTGATTCTGGTTCATCTGAA
GTCAAAGAACTCACTGTATATGTAGACGAGGGATATAAGAGCTATATTGAAGAGGTTGCT
AAAGCTTATGAAAAAGAAGCTGGAGTAAAAGTCACTCTTAAAACTGGTGATGCTCTAGGA
GGTCTTGATAAACTTTCTCTTGACAACCAATCTGGTAATGTCCCTGATGTTATGATGGCT
CCATACGACCGTGTAGGTAGCCTTGGTTCTGACGGACAACTTTCAGAAGTGAAATTGAGC
GATGGTGCTAAAACAGACGACACAACTAAATCTCTTGTAACAGCTGCTAATGGTAAAGTT
TACGGTGCTCCTGCCGTTATCGAGTCACTTGTTATGTACTACAACAAAGACTTGGTGAAA
GATGCTCCAAAAACATTTGCTGACTTGGAAAACCTTGCTAAAGATAGCAAATACGCATTC
GCTGGTGAAGATGGTAAAACTACTGCCTTCCTAGCTGACTGGACAAACTTCTACTATACA
TATGGACTTCTTGCCGGTAACGGTGCTTACGTCTTTGGCCAAAACGGTAAAGACGCTAAA
GACATCGGTCTTGCAAACGACGGTTCTATCGCAGGTATCAACTACGCTAAATCTTGGTAC
GAAAAATGGCCTAAAGGTATGCAAGATACAGAAGGTGCTGGAAACTTAATCCAAACTCAA
TTCCAAGAAGGTAAAACAGCTGCTATCATCGACGGACCTTGGAAAGCTCAAGCCTTTAAA
GATGCTAAAGTAAACTACGGAGTTGCAACTATCCCAACTCTTCCAAATGGAAAAGAATAT
GCTGCATTCGGTGGTGGTAAAGCTTGGGTCATTCCTCAAGCCGTTAAGAACCTTGAAGCT
TCTCAAAAATTTGTAGACTTCCTTGTTGCAACTGAACAACAAAAAGTATTATATGATAAG
ACTAACGAAATCCCAGCTAATACTGAGGCTCGTTCATACGCTGAAGGTAAAAACGATGAG
TTGACAACAGCTGTTATCAAACAGTTCAAGAACACTCAACCACTGCCAAACATCTCTCAA
ATGTCTGCAGTTTGGGATCCAGCGAAAAATATGCTCTTTGATGCTGTAAGTGGTCAAAAA
GATGCTAAAACAGCTGCTAACGATGCTGTAACATTGATCAAAGAAACAATCAAACAAAAA
TTTGGTGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNOXC_RS10325 [old locus tags: SPNOXC18590 SPNOXC_18590 ]
- symbol: SPNOXC_RS10325
- description: extracellular solute-binding protein
- length: 423
- theoretical pI: 4.82456
- theoretical MW: 45366.7
- GRAVY: -0.353664
⊟Function[edit | edit source]
- ⊞TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids carbohydrate ABC transporter substrate-binding protein, CPR_0540 family (TIGR03850; HMM-score: 57.6)and 1 more
- TheSEED: see SPNOXC18590
- ⊞PFAM: PBP (CL0177) SBP_bac_8; Bacterial extracellular solute-binding protein (PF13416; HMM-score: 137.9)SBP_bac_1; Bacterial extracellular solute-binding protein (PF01547; HMM-score: 123.9)and 3 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000095484 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MSSKFMKSTAVLGTVTLASLLLVACGSKTADKPADSGSSEVKELTVYVDEGYKSYIEEVAKAYEKEAGVKVTLKTGDALGGLDKLSLDNQSGNVPDVMMAPYDRVGSLGSDGQLSEVKLSDGAKTDDTTKSLVTAANGKVYGAPAVIESLVMYYNKDLVKDAPKTFADLENLAKDSKYAFAGEDGKTTAFLADWTNFYYTYGLLAGNGAYVFGQNGKDAKDIGLANDGSIAGINYAKSWYEKWPKGMQDTEGAGNLIQTQFQEGKTAAIIDGPWKAQAFKDAKVNYGVATIPTLPNGKEYAAFGGGKAWVIPQAVKNLEASQKFVDFLVATEQQKVLYDKTNEIPANTEARSYAEGKNDELTTAVIKQFKNTQPLPNISQMSAVWDPAKNMLFDAVSGQKDAKTAANDAVTLIKETIKQKFGE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1934 PneumoExpress