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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 25-OCT-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae NU83127
  • locus tag: SPNU_0226 [new locus tag: EL277_RS01220 ]
  • pan locus tag?: PNEUPAN000983000
  • symbol: infA
  • pan gene symbol?: infA
  • synonym:
  • product: Translation initiation factor IF-1

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPNU_0226 [new locus tag: EL277_RS01220 ]
  • symbol: infA
  • product: Translation initiation factor IF-1
  • replicon: chromosome
  • strand: +
  • coordinates: 216004..216222
  • length: 219
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    GTGGCAAAAGACGATGTGATTGAAGTTGAAGGCAAAGTAGTTGATACAATGCCGAATGCA
    ATGTTTACGGTTGAACTTGAAAATGGACATCAGATTTTAGCAACAGTTTCTGGTAAAATT
    CGTAAAAACTATATTCGTATTTTAGCGGGAGATCGTGTTACTGTCGAAATGAGTCCATAT
    GACTTGACACGTGGACGTATCACTTACCGCTTTAAATAA
    60
    120
    180
    219

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPNU_0226 [new locus tag: EL277_RS01220 ]
  • symbol: InfA
  • description: Translation initiation factor IF-1
  • length: 72
  • theoretical pI: 8.98872
  • theoretical MW: 8202.47
  • GRAVY: -0.241667

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Genetic information processing Protein synthesis Translation factors translation initiation factor IF-1 (TIGR00008; HMM-score: 126.8)
    and 1 more
    Genetic information processing Protein synthesis Translation factors translation initiation factor eIF-1A (TIGR00523; HMM-score: 18.7)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • ⊞PFAM:
    OB (CL0021) eIF-1a; Translation initiation factor 1A / IF-1 (PF01176; HMM-score: 94.3)
    and 4 more
    RsgA_N; RsgA N-terminal domain (PF16745; HMM-score: 17.4)
    S1; S1 RNA binding domain (PF00575; HMM-score: 16.6)
    TOBE_2; TOBE domain (PF08402; HMM-score: 13)
    no clan defined PRE_C2HC; Associated with zinc fingers (PF07530; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 10
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 0
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003286
    • TAT(Tat/SPI): 0.000374
    • LIPO(Sec/SPII): 0.000402
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG34117 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MAKDDVIEVEGKVVDTMPNAMFTVELENGHQILATVSGKIRKNYIRILAGDRVTVEMSPYDLTRGRITYRFK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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