From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 25-OCT-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae HU-OH
  • locus tag: SPOH_0112 [new locus tag: EL271_RS00665 ]
  • pan locus tag?: PNEUPAN000791000
  • symbol: lytB_1
  • pan gene symbol?: pspA
  • synonyms: cbpA, pspC
  • product: Putative endo-beta-N-acetylglucosaminidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPOH_0112 [new locus tag: EL271_RS00665 ]
  • symbol: lytB_1
  • product: Putative endo-beta-N-acetylglucosaminidase
  • replicon: chromosome
  • strand: +
  • coordinates: 118681..120579
  • length: 1899
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGAATAAGAAAAAAATGATTTTAACAAGTCTAGCCAGCGTCGCTATCTTAGGGGCTGGT
    TTTGTTACGTCTCAGCCTACTTTTGTAAGAGCAGAAGAAGCTCCCGTAGCTAGTCAGTCT
    AAAGCTGAGAAAGACTATGATGCAGCAATGAAAAATGCTGAGGATGCGAAAAAAGCAGTA
    GAAGATGCTCAAAAGGCTTTAGATGACGCAAAAGCTGCTCAGAAAAAGTATGCCGAGGAT
    CAGAAGAAAACTGAGGAGAAAGCCGCGCTAGAAAAAGCAGCGTCTGAAGAGATGGATAAG
    GCAGTGGCAGCAGTTCAACAAGCGTATCTAGCCTATCAACAAGCTACAGACAAAGCCGCA
    AAAGACGCAGCAGATAAGATGATAGATGAAGCTAAGAAACGCGAAGAAGAGGCAAAAACT
    AAATTTAATACTGTTCGAGCAATGGTAGTTCCTGAGCCAGAGCAGTTGGCTGAGACTAAG
    AAAAAATCAGAAGAAGCTAAACAAAAAGCACCAGAACTTACTAAAAAACTAGAAGAAGCT
    AAAGCAAAATTAGAAGAAGCTGAGAAAAAAGCTACTGAAGCCAAACAAAAAGTGGATGCA
    GAACATGCTGAAGAAGTCGTTCCTCAAGCTAAAATCGCTGAGTTGGAAAATGAAGTTCAG
    AAACTAGAAAAAGATCTCAAAGAGATTGATGAATCTGACTCAGAAGATTATGTTAAAGAA
    GGTCTCCGTGCTCCTCTTCAATCTGAATTGGATGCCAAACAAGCTAAACTATCAAAACTT
    GAAGAGTTGAGTGATAAGATTGATGAGTTAGACGCTGAAATTGCAAAACTTGAAAAAAAT
    GTAGAAGATTTCAAAAACTCAAACGGTGAGCAAGCTGAACAATACCGTGCTGCAGCTGAA
    GAAGACTTAGCTGCTAAACAAGCTGAATTAGAAAAAACTGAAGCTGACCTTAAGAAAGCA
    GTTAATGAGCCAGAAAAACCAGCTCCAGCTCCAGAAACTCCAGCCCCAGAAGCACCAGCT
    GAACAACCAAAACCAGCGCCGGCTCCTCAACCAGCTCCCGCACCAAAACCAGAGAAGCCA
    GCTGAACAACCAAAACCAGAAAAAACAGATGATCAACAAGCTGAAGAAGACTATGCTCGT
    AGATCAGAAGAAGAATATAATCGCTTGACTCAACAGCAACCGCCAAAAGCAGAAAAACCA
    GCTCCTGCACCACAACCAGAGCAACCAGCTCCTGCACCAAAAACAGGCTGGAAACAAGAA
    AACGGTATGTGGTACTTCTACAATACTGATGGTTCAATGGCGACAGGATGGCTCCAAAAC
    AACGGATCATGGTACTACCTCAACAGCAATGGTGCTATGGCAACAGGTTGGCTCCAAAAC
    AATGGATCATGGTATTACCTAAATGCTAACGGTGCTATGGCAACAGGATGGCTCCAAAAC
    AATGGATCATGGTACTACCTCAACAGCAATGGCGCTATGGCGACAGGATGGCTCCAATAC
    AATGGCTCATGGTACTATCTAAACGCTAGCGGCGCTATGGCAACAGGTTGGGCTAAAGTC
    AACGGATCATGGTACTACCTCAACGCTAACGGTTCAATGGCAACAGGTTGGCTCCAATAC
    AACGGATCATGGTACTACCTCAACGCTAACGGTGCTATGGCAACAGGTTGGGCTAAAGTC
    AACGGATCATGGTACTACCTCAACGCTAACGGTTCAATGGCAACAGGTTGGGTGAAAGAT
    GGAGATACCTGGTACTATCTTGAAGCATCAGGTGCTATGAAAGCAAGCCAATGGTTCAAA
    GTATCAGATAAATGGTACTATGTCAATGGCTTAGGTGCCCTTGCAGTCAACACAACTGTA
    GATGGCTATGAAGTCAATGCCAATGGTGAATGGGTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1899

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPOH_0112 [new locus tag: EL271_RS00665 ]
  • symbol: LytB_1
  • description: Putative endo-beta-N-acetylglucosaminidase
  • length: 632
  • theoretical pI: 4.53926
  • theoretical MW: 69927
  • GRAVY: -0.903797

⊟Function[edit | edit source]

  • TIGRFAM:
    glucan-binding repeat (TIGR04035; HMM-score: 75.5)
    and 5 more
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 28.7)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 28.7)
    helix-rich protein (TIGR04523; HMM-score: 19.8)
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 9.7)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 9.7)
  • TheSEED: data available for D39
  • PFAM:
    Choline_binding (CL0694) Choline_bind_1; Putative cell wall binding repeat (PF01473; HMM-score: 206.9)
    Choline_bind_3; Choline-binding repeat (PF19127; HMM-score: 188.3)
    and 3 more
    Choline_bind_2; Choline-binding repeat (PF19085; HMM-score: 55.1)
    no clan defined HSBP1; Heat shock factor binding protein 1 (PF06825; HMM-score: 12.3)
    DASH_Dam1; DASH complex subunit Dam1 (PF08653; HMM-score: 10.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.72
    • Internal Helices: 0
  • DeepLocPro: Cell wall & surface
    • Cytoplasmic Score: 0.0033
    • Cytoplasmic Membrane Score: 0.0006
    • Cell wall & surface Score: 0.8073
    • Extracellular Score: 0.1887
  • SignalP: Signal peptide SP(Sec/SPI) length 31 aa
    • SP(Sec/SPI): 0.98746
    • TAT(Tat/SPI): 0.006847
    • LIPO(Sec/SPII): 0.004361
    • Cleavage Site: CS pos: 31-32. VRA-EE. Pr: 0.9282
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG36144 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNKKKMILTSLASVAILGAGFVTSQPTFVRAEEAPVASQSKAEKDYDAAMKNAEDAKKAVEDAQKALDDAKAAQKKYAEDQKKTEEKAALEKAASEEMDKAVAAVQQAYLAYQQATDKAAKDAADKMIDEAKKREEEAKTKFNTVRAMVVPEPEQLAETKKKSEEAKQKAPELTKKLEEAKAKLEEAEKKATEAKQKVDAEHAEEVVPQAKIAELENEVQKLEKDLKEIDESDSEDYVKEGLRAPLQSELDAKQAKLSKLEELSDKIDELDAEIAKLEKNVEDFKNSNGEQAEQYRAAAEEDLAAKQAELEKTEADLKKAVNEPEKPAPAPETPAPEAPAEQPKPAPAPQPAPAPKPEKPAEQPKPEKTDDQQAEEDYARRSEEEYNRLTQQQPPKAEKPAPAPQPEQPAPAPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNSNGAMATGWLQNNGSWYYLNANGAMATGWLQNNGSWYYLNSNGAMATGWLQYNGSWYYLNASGAMATGWAKVNGSWYYLNANGSMATGWLQYNGSWYYLNANGAMATGWAKVNGSWYYLNANGSMATGWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGLGALAVNTTVDGYEVNANGEWV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPOH_0112&oldid=81765"