From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 25-OCT-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae HU-OH
  • locus tag: SPOH_0754 [new locus tag: EL271_RS04080 ]
  • pan locus tag?: PNEUPAN001841000
  • symbol: thiI
  • pan gene symbol?: thiI
  • synonym:
  • product: putative tRNA sulfurtransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPOH_0754 [new locus tag: EL271_RS04080 ]
  • symbol: thiI
  • product: putative tRNA sulfurtransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 759995..761209
  • length: 1215
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGCAGTATTCAGAAATTATGATTCGCTACGGAGAGTTGTCAACCAAGGGTAAAAACCGT
    ATGCGTTTCATCAATAAACTTCGTAATAATATTTCGGACGTTTTGTCTATCTATACCCAA
    GTTAAGGTAACAGCAGATCGCGACCGTGCCCACGCTTACCTCAATGGAGCTGATTACACA
    GCAGTTGCAGAATCTCTCAAACAAGTTTTTGGAATTCAAAACTTTTCTCCTGTTTATAAG
    GTTGAAAAATCTGTAGAAGTTTTGAAGTCTTCTGTCCAAGAGATTATGCGGGACATCTAC
    AAGGAAGGTATGACCTTTAAGATTTCTAGCAAGCGTAGCGACCACAACTTTGAACTTGAT
    AGTCGTGAACTCAACCAAACACTTGGAGGGGCTGTATTCGAAGCCATTCCAAATGTGCAA
    GTTCAAATGAAAAGTCCTGACATCAATCTTCAGGTGGAGATTCGTGAAGAAGCAGCCTAT
    CTTTCTTATGAAACCATTCGTGGGGCTGGTGGTTTGCCAGTTGGAACTTCAGGTAAAGGG
    ATGCTCATGTTGTCAGGAGGGATTGACTCACCTGTAGCAGGTTATCTTGCTCTTAAGCGT
    GGGGTGGATATCGAGGCAGTTCACTTTGCTAGTCCACCATATACTAGTCCTGGTGCCCTC
    AAGAAAGCGCAGGACTTGACCCGTAAATTGACCAAGTTTGGCGGAAATATCCAGTTTATC
    GAGGTGCCTTTCACAGAGATTCAAGAGGAAATCAAAGCCAAAGCGCCAGAAGCTTATTTG
    ATGACTCTAACTCGTCGCTTTATGATGCGGATTACTGACCGTATTCGTGAGGTACGAAAT
    GGTTTTGTTATCATCAATGGGGAAAGTCTAGGTCAAGTAGCCAGCCAAACCCTTGAAAGT
    ATGAAGGCTATCAATGCTGTTACCAACACTCCCATCATTCGTCCTGTGGTTACCATGGAC
    AAGTTGGAAATCATTGACATCGCCCAGGAAATCGATACCTTTGACATTTCAATCCAACCG
    TTTGAAGACTGTTGTACCATTTTTGCACCAGATCGTCCAAAAACAAATCCTAAAATTAAG
    AATGCGGAGCAGTACGAAGCGCGTATGGATGTTGAAGGCTTGGTTGAGCGAGCAGTGGCT
    GGAATCATGATTACTGAAATCACACCTCAAGCCGAAAAAGATGAAGTTGATGACTTGATT
    GATAATCTACTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1215

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPOH_0754 [new locus tag: EL271_RS04080 ]
  • symbol: ThiI
  • description: putative tRNA sulfurtransferase
  • length: 404
  • theoretical pI: 5.13004
  • theoretical MW: 45194.6
  • GRAVY: -0.242327

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA sulfurtransferase ThiI (TIGR00342; EC 2.8.1.4; HMM-score: 400.4)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine tRNA sulfurtransferase ThiI (TIGR00342; EC 2.8.1.4; HMM-score: 400.4)
    and 5 more
    Unknown function General queuosine biosynthesis protein QueC (TIGR00364; HMM-score: 23)
    Hypothetical proteins Conserved TIGR00268 family protein (TIGR00268; HMM-score: 22.3)
    Hypothetical proteins Conserved putative methyltransferase, TIGR01177 family (TIGR01177; HMM-score: 18.2)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA(Ile)-lysidine synthetase (TIGR02432; EC 6.3.4.-; HMM-score: 14.8)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis GMP synthase (glutamine-hydrolyzing), N-terminal domain (TIGR00888; EC 6.3.5.2; HMM-score: 11.6)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    HUP (CL0039) ThiI; Thiamine biosynthesis protein (ThiI) (PF02568; HMM-score: 210.7)
    and 6 more
    no clan defined THUMP; THUMP domain (PF02926; HMM-score: 70.8)
    HUP (CL0039) QueC; Queuosine biosynthesis protein QueC (PF06508; HMM-score: 21.3)
    ATP_bind_3; PP-loop family (PF01171; HMM-score: 14.1)
    tRNA_Me_trans; tRNA methyl transferase HUP domain (PF03054; HMM-score: 13.6)
    NAD_synthase; NAD synthase (PF02540; HMM-score: 11.9)
    no clan defined FlaC_arch; Flagella accessory protein C (FlaC) (PF05377; HMM-score: 11.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9943
    • Cytoplasmic Membrane Score: 0.0025
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0031
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.013234
    • TAT(Tat/SPI): 0.000539
    • LIPO(Sec/SPII): 0.001019
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG36782 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MQYSEIMIRYGELSTKGKNRMRFINKLRNNISDVLSIYTQVKVTADRDRAHAYLNGADYTAVAESLKQVFGIQNFSPVYKVEKSVEVLKSSVQEIMRDIYKEGMTFKISSKRSDHNFELDSRELNQTLGGAVFEAIPNVQVQMKSPDINLQVEIREEAAYLSYETIRGAGGLPVGTSGKGMLMLSGGIDSPVAGYLALKRGVDIEAVHFASPPYTSPGALKKAQDLTRKLTKFGGNIQFIEVPFTEIQEEIKAKAPEAYLMTLTRRFMMRITDRIREVRNGFVIINGESLGQVASQTLESMKAINAVTNTPIIRPVVTMDKLEIIDIAQEIDTFDISIQPFEDCCTIFAPDRPKTNPKIKNAEQYEARMDVEGLVERAVAGIMITEITPQAEKDEVDDLIDNLL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPOH_0754&oldid=82407"