From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 25-OCT-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae HU-OH
  • locus tag: SPOH_0765 [new locus tag: EL271_RS04135 ]
  • pan locus tag?: PNEUPAN001858000
  • symbol: radD_2
  • pan gene symbol?: hsdR_2
  • synonym:
  • product: Putative DNA repair helicase RadD

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPOH_0765 [new locus tag: EL271_RS04135 ]
  • symbol: radD_2
  • product: Putative DNA repair helicase RadD
  • replicon: chromosome
  • strand: +
  • coordinates: 769538..771739
  • length: 2202
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    ATGATTGCTACATCAACTGTGGCTACTGCCTTTATGGCGCGTCGTGCTTTAGAGCAGGCT
    GTCCATTGGATATATAGTCACGATTCATATTTAGAAGCTCCCTATCGTGCTACTCTATCT
    TCTTTAGTATGGGATGATGATTTTAGGGATATCGTAGATTCTGAACTCCACAAGCAGATA
    GTTCTGTTGATTCGGTGGGGAAACCATGCTGCTCATGGTGGTGAAATTAAGGAACGAGAA
    GCGATTTTAGCTTTGCATCATTTGTATCAGTTTGTTAATTTTATCGATTATTGTTACAGC
    AATGAGTTTGTGGAGCGTTATTTTGATGAGAAGTGCTTACCACTTTCAGCAAACATCAAA
    TACCGAGAAACTCCACAATCTATGATAAAGTTACAAGACAGTTTACCAGAACTGCCTGAT
    TTTCATGAACAGATGGCTGCTCAGTCCGTAGAAGTTCAAGAGACTTATACTGAAAAACGT
    GAGACTGCAGCGCAACGGCAAGATGTGCCTTTCCATATTGATCAATTGTCTGAGGCAGAG
    ACAAGAAAGCTCTTTATTGATATCGATCTCCGTTTAGCAGGATGGATATTTGAAGAAAAC
    TGTCGTGTTGAGATAGCCGTTGATGGTCTCAAGCACGGTTCAGGAATTGGTTACTGTGAC
    TATGTACTTTATGGTAAAAATGGGAAAATTTTAGCGATTGTAGAGGCTAAAAAAGCCTCT
    GTCAATCCAGAAGTAGGGGAAGTACAGGTCAAAGAATATGCTGAAGCTTTGGAGAAACAT
    ATCGGCTATCAGCCAATTTGCTTTATTACAAATGGGTTGAAGCACTATATACTTGATGGT
    CCGAACCGCCGCCAGATTGCAGGCTTTTACTCTCAAGAAGAATTGCAATTAGTGATGGAT
    AGACGTCATCTTCAAAAACCGCTTGAGGATATTTCTAGTAAAATTAGGGACGATATTTCC
    GGGCGTCACTACCAAAAACATGCCATTGCAAGCGTTTGTGAAGCTTTCTCTAATCATCGT
    AGACAGGCACTTTTGGTTATGGCAACTGGGGCGGGGAAAACTCGTACAGCAGTTTCTCTA
    GTTGATATCTTATCACGTCATAACTGGGTAAAAAACGTTCTCTTCTTAGCCGATAGAACT
    TCCTTGGTTAAGCAAGCCTATGATTCGTTTAGAAAATTACTCCCAGATCTTTCCGTTTGT
    AACTTCTTAGAAGATAAAGAAGGAGCTCAATCAAGTCGTATGGTCTTTTCAACTTATCCG
    ACCATGATTGGAGCGATTAGTGGTCAAGAAGAAGTAAATCAACGCCCTTTTACTGTTGGG
    CATTTTGACCTTATCATAATTGACGAATCTCACCGTTCTATTTATCAGAAATACAAGTCC
    ATTTTTGATTATTTTGATGCAAGAATTGTAGGCTTAACAGCTACTCCGCGTCAAGATTTA
    GATAAAAACACCTATGGATTCTTTAATTTGGAGAATGGGGTTCCAACATATGCATATGAT
    TTGAAAGAGGCTGTTAAAGACGGATATTTAGTAGCCTATCATTCTATCGAAATCAAACTG
    AAACTACCTACGGATGGTCTACATTATGATGATTTGTCCGAAGAAGAAAAGGAACATTTT
    GATAGCAAATTTGAAGACGATAGCTGTGAAAAAGATATTGATGGGAGTGTATTTAATTCC
    TTTATTTTCAATAAAAGTACAGTAGAAATTGTTTTAAATGAACTCATGACAAGAGGAATT
    CAGACAGCCTCGGGTGATGAAATTGGTAAAACTATTATTTTTGCTAAAAATCATGATCAT
    GCGGAATATATCAGAGGTATTTTTAACAACCGCTATCCTGAAAAAGGGAGCGACTATGCT
    CAGGTGATTGATTATAGTATTAAGCATTATCAGACCTTGATTGATGATTTTAAAATTAAG
    GAGAAGTATCCTCAAATTGCGATTTCTGTCGATATGTTAGATACAGGTATTGATGTACCA
    GAGGTTGTTAATTTAGTCTTCTTCAAGAAAGTACGCTCTAAAACTAAGTTTTGGCAGATG
    ATTGGTCGAGGAACCCGTCTATGTAAAGATTTATTTGGACCTGAGCAGGATAAGGAAAAC
    TTCTTGGTATTTGATTATGGGGATAATTTTGATTATTTTCGTGCAGATCCAAGAGATGGA
    GAAGGGTCGTCACATTGTTTCGTTGACTCAGCGTTTATTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2202

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPOH_0765 [new locus tag: EL271_RS04135 ]
  • symbol: RadD_2
  • description: Putative DNA repair helicase RadD
  • length: 733
  • theoretical pI: 5.36649
  • theoretical MW: 84263.6
  • GRAVY: -0.384584

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism Restriction/modification type I site-specific deoxyribonuclease, HsdR family (TIGR00348; EC 3.1.21.3; HMM-score: 66.5)
    DNA phosphorothioation system restriction enzyme (TIGR04095; HMM-score: 55.7)
    and 2 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit B (TIGR00631; EC 3.1.25.-; HMM-score: 31.8)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair ATP-dependent DNA helicase RecG (TIGR00643; EC 3.6.4.12; HMM-score: 20)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    P-loop_NTPase (CL0023) ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 123.2)
    and 9 more
    SWI2_SNF2; SWI2/SNF2 ATPase (PF18766; HMM-score: 65.1)
    PDDEXK (CL0236) HSDR_N; Type I restriction enzyme R protein N terminus (HSDR_N) (PF04313; HMM-score: 42.7)
    P-loop_NTPase (CL0023) DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 38.6)
    Helicase_C; Helicase conserved C-terminal domain (PF00271; HMM-score: 38.1)
    KNTase_C (CL0291) DUF4145; Domain of unknown function (DUF4145) (PF13643; HMM-score: 28.6)
    PDDEXK (CL0236) HSDR_N_2; Type I restriction enzyme R protein N terminus (HSDR_N) (PF13588; HMM-score: 24.2)
    P-loop_NTPase (CL0023) SNF2-rel_dom; SNF2-related domain (PF00176; HMM-score: 15.4)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 15)
    DUF2075; Schlafen group 3, DNA/RNA helicase domain (PF09848; HMM-score: 13.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9198
    • Cytoplasmic Membrane Score: 0.0392
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.0402
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011792
    • TAT(Tat/SPI): 0.000858
    • LIPO(Sec/SPII): 0.00297
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG36793 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MIATSTVATAFMARRALEQAVHWIYSHDSYLEAPYRATLSSLVWDDDFRDIVDSELHKQIVLLIRWGNHAAHGGEIKEREAILALHHLYQFVNFIDYCYSNEFVERYFDEKCLPLSANIKYRETPQSMIKLQDSLPELPDFHEQMAAQSVEVQETYTEKRETAAQRQDVPFHIDQLSEAETRKLFIDIDLRLAGWIFEENCRVEIAVDGLKHGSGIGYCDYVLYGKNGKILAIVEAKKASVNPEVGEVQVKEYAEALEKHIGYQPICFITNGLKHYILDGPNRRQIAGFYSQEELQLVMDRRHLQKPLEDISSKIRDDISGRHYQKHAIASVCEAFSNHRRQALLVMATGAGKTRTAVSLVDILSRHNWVKNVLFLADRTSLVKQAYDSFRKLLPDLSVCNFLEDKEGAQSSRMVFSTYPTMIGAISGQEEVNQRPFTVGHFDLIIIDESHRSIYQKYKSIFDYFDARIVGLTATPRQDLDKNTYGFFNLENGVPTYAYDLKEAVKDGYLVAYHSIEIKLKLPTDGLHYDDLSEEEKEHFDSKFEDDSCEKDIDGSVFNSFIFNKSTVEIVLNELMTRGIQTASGDEIGKTIIFAKNHDHAEYIRGIFNNRYPEKGSDYAQVIDYSIKHYQTLIDDFKIKEKYPQIAISVDMLDTGIDVPEVVNLVFFKKVRSKTKFWQMIGRGTRLCKDLFGPEQDKENFLVFDYGDNFDYFRADPRDGEGSSHCFVDSAFI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPOH_0765&oldid=82418"