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Hu17
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TCH8431/19A
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Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae P1031
  • locus tag: SPP_0705 [new locus tag: SPP_RS03440 ]
  • pan locus tag?: PNEUPAN001601000
  • symbol: SPP_0705
  • pan gene symbol?: sccB
  • synonym:
  • product: bacteriocin-associated integral membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPP_0705 [new locus tag: SPP_RS03440 ]
  • symbol: SPP_0705
  • product: bacteriocin-associated integral membrane protein
  • replicon: chromosome
  • strand: +
  • coordinates: 645950..647803
  • length: 1854
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    TTGGAGAATTTTGCAAACTCAGAACAGAGTTTAATAGCTAGAAGAATTGTAGAGCCGAGT
    AAGGATGGGACGACTCACTTTACTTATGCAACTTATGGTCAGGGAACTTTACCAAAAGAA
    TTCCAAGAAGCTAGCCAAGAAAGTCGTGAACGTAGTGATCCGCTAAATAGTTATCTCCTT
    TTGTCAGGCTCCTTGACGAAAGAAAAGCTTGCCGATAAATTAGGAGATTTGGGTTATAAA
    GCAAGTGCTGACCGAAAGATACCGCCCTATTTTCTTGCTTTTCGAATATTACTAAATCCC
    CTTATTTTAATTAGTTTAGCAATATTTGGCTTATCTTTCTTTGCTTTAGTGATTATCACT
    CGGATTAAGGAAATGAGAGCAGCAGGTATAAAACTCTTTTCTGGTCAGACTCTCTTATCC
    ATCATGGGGCATTCTTTATCTACTGATATCAAATGGCTCCTTCTATCAGCCCTCCTTTCC
    TTCCTAGGTGGGGGAGTCGTTCTTTTTAGTCAAGGTTTGTTTTATCCTATCTTGTTAGCC
    ACCTATGGTTTTGGGATTAGTTTCTATCTGTTGTTTTTATTGGCGATTTCAATTTTACTA
    ATGCTTCTTTATCTAATGAGTTTGAGTTACAAAGCATTAGTTCCCGTTATTAAGGGGAGA
    TTACCCCTTAAACGCCTGATGATTTTAACCCTATTGTGTCAGTTGGTTGCTGTCTTTACA
    GTAGGCTACGCTGTTAAGACAGGTTTGATGTCTTACCAACGATTGAAAGAACTTGAAATT
    TCAAAACAAGCATGGCAGGATAGAGCAGACTATTATCAAATTTCTTTTGGCTTAGGTGAT
    AGAGGAAAAGATACAGAAAATCAGAGCAAGTGGTATGCCTTTGCCAAGGAAGCAATCGAA
    GAAGAACAAGCTCTTTATGTAAAGGATAATCTGCTCCATTTTGCCAATCCACAAGGAAAA
    AATGAACAGGGAGAGACACTGGATACCTATAGTCCAGATGCTAATACGCTCTATGTTAGT
    CCCAGTTATTTGGACAAGGAAAAGGTCGTGGTAGATGCTGAGACCAAACAGAAGTTAGCC
    CATCTCCAAAAAGGTGAGTTTATCCTCTTGCTCCCAGAACATTTGCGCTCTCGAGAAGCA
    GAACTTAAGAAAGTTTTTGAAGAAAGATTGAGTTATTATGGAAAATCTGGTGAGGAGGCA
    AGTGCTCCTTTGGATTATGAGATGAAAGCGCACGTTAGTTATCTTTCAATGGGGGAAAAG
    CGGTTTGTTTATAATAACGGTGAGAATCCCGTATCTACTCAGTATTTGACTGATCCGATT
    TTAGTGGTATTCACGCCGACTTCTACAGGTGATAGTTTTATATCCTTATCTAGTTGGTCT
    ATCAATGCTGGAAAACAACTCTTTATCAAAGGATATGAGAGTGGGCTAGAACTCTTGAAG
    AAAGCTGGAATTTATGAGCAAGTATCCTATCTTAAAGAAGGAAGAAGTGTTTATCTAACT
    CGTTATAATGAAGTTCAAACTGAAACAGCAACTTTAATCTTAGGAGCTATTGTGGGGATA
    GCTAGTTCCTTGTTACTATTTTATTCTGTCAATCTTCTATATTTCGAGCAATTCCGCCGA
    GATATTTTGATTAAACGAATTTCAGGTTTACGATTTTTTGAAACACATGCTCAGTATATG
    GTTAGTCAATTTGCCAGTTTTGTATTTGGTGCTAGTCTCTTTATTTTAAGCAGTCGAGAC
    TTGGTGATTGGCTTGCTCACTTTATTAGTCTTTCTAGCTAGTGCAGTTCTGACGCTTTAC
    CGTCAAGCGCAGAAAGAATCTCGTGTTTCTATGACAATTATGAAAGGAAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1854

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPP_0705 [new locus tag: SPP_RS03440 ]
  • symbol: SPP_0705
  • description: bacteriocin-associated integral membrane protein
  • length: 617
  • theoretical pI: 9.16016
  • theoretical MW: 69476.2
  • GRAVY: 0.106321

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Toxin production and resistance bacteriocin-associated integral membrane protein (TIGR01654; HMM-score: 709.9)
  • TheSEED  :
    • immunity protein, probable
  • PFAM:
    BPD_transp_1 (CL0404) DUF1430; Protein of unknown function (DUF1430) (PF07242; HMM-score: 94.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.001
    • Cytoplasmic Membrane Score: 0.9594
    • Cell wall & surface Score: 0.0017
    • Extracellular Score: 0.0379
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008502
    • TAT(Tat/SPI): 0.001599
    • LIPO(Sec/SPII): 0.001072
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACO20646 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MENFANSEQSLIARRIVEPSKDGTTHFTYATYGQGTLPKEFQEASQESRERSDPLNSYLLLSGSLTKEKLADKLGDLGYKASADRKIPPYFLAFRILLNPLILISLAIFGLSFFALVIITRIKEMRAAGIKLFSGQTLLSIMGHSLSTDIKWLLLSALLSFLGGGVVLFSQGLFYPILLATYGFGISFYLLFLLAISILLMLLYLMSLSYKALVPVIKGRLPLKRLMILTLLCQLVAVFTVGYAVKTGLMSYQRLKELEISKQAWQDRADYYQISFGLGDRGKDTENQSKWYAFAKEAIEEEQALYVKDNLLHFANPQGKNEQGETLDTYSPDANTLYVSPSYLDKEKVVVDAETKQKLAHLQKGEFILLLPEHLRSREAELKKVFEERLSYYGKSGEEASAPLDYEMKAHVSYLSMGEKRFVYNNGENPVSTQYLTDPILVVFTPTSTGDSFISLSSWSINAGKQLFIKGYESGLELLKKAGIYEQVSYLKEGRSVYLTRYNEVQTETATLILGAIVGIASSLLLFYSVNLLYFEQFRRDILIKRISGLRFFETHAQYMVSQFASFVFGASLFILSSRDLVIGLLTLLVFLASAVLTLYRQAQKESRVSMTIMKGK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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