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gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae P1031
  • locus tag: SPP_2015 [new locus tag: SPP_RS09930 ]
  • pan locus tag?: PNEUPAN003611000
  • symbol: SPP_2015
  • pan gene symbol?: diiA
  • synonym:
  • product: cell wall surface anchor family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPP_2015 [new locus tag: SPP_RS09930 ]
  • symbol: SPP_2015
  • product: cell wall surface anchor family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1852419..1853312
  • length: 894
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    TTGGTAGCACAAGATCCAAAAGCACAAGATAGTACTAAACCGACTGCTGAAAAATCAACT
    GTTAAAGCACCTGCTCAAAGAGTAGATGTAAAAGATATAACTCATTTAACAGATGAAGAA
    AAAGTTAAGGTTGCTATTTTACAAGCAAATGGTTCAGCATTAGACGGAGCGACAATCAAT
    GTAGCTGGAGATGGTACAGCAACAATCACATTCCCAGATGGTTCAGTAGTGACGATTCTA
    GGAAAAGATACAGTTCAACAATCTGCGAAAGGTGAATCTGTAACTCAAGAAGCTACACCA
    GAGTATAAGCTAGAAACTACACCAGGTGGAGATAAGGGAGGCAATACTGGAAGATCAGAT
    GCTAATGCGAATGCAGGCGGTGGTAGCCAGGCAGGTGGACCAGTTCACACAGGTTCACAA
    AACTCAGCTCAATCACAAGCTTCTAAGCAATTAGCTACTGAAAAAGAATCAGCTAAAAAT
    GCCATTGAAAAAGCAGCCAAGAACAAGCAGGATGAAATCAAAGGCGCACCGCTTTCTGAT
    AAAGAAAAAGCAGAACTTTTAGCAAGAGTGGAAGCAGAAAAACAAGCAGCTCTCAAAGAG
    ATTGAAAATGCGAAAACTATGGAAGATGTGAAGGAAGCAGAAACGATTGGAGTGCAAGCC
    ATTGCCATGGTTGCAGTTCCTAAGAGACCAGTGGCTCCTAATGCTGCTCCTAAGACAACA
    AGTGCACCGCAAGCAACTGCAGGAACAATGCAAGATGTTACCTACCAGTCACCTGCTGGC
    AAACAATTACCTAACACAGGTTCAGCATCAAGTGCAGCACTTGCTAGTCTTGGTCTAGTG
    GTGGCAACAAGTGGTTTTGCTTTGCTAGGAAGAAAGACTAGACGTAGAAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    894

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPP_2015 [new locus tag: SPP_RS09930 ]
  • symbol: SPP_2015
  • description: cell wall surface anchor family protein
  • length: 297
  • theoretical pI: 9.3007
  • theoretical MW: 30437.8
  • GRAVY: -0.548148

⊟Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 27)
  • TheSEED  :
    • Cell wall surface anchor family protein
  • PFAM:
    E-set (CL0159) aRib; Atypical Rib domain (PF18938; HMM-score: 63.6)
    B_GA (CL0598) DUF1542; Domain of Unknown Function (DUF1542) (PF07564; HMM-score: 52.3)
    and 3 more
    no clan defined Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 31.7)
    Tcp10_C; T-complex protein 10 C-terminus (PF07202; HMM-score: 13)
    P-loop_NTPase (CL0023) AAA_13; AAA domain (PF13166; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 9.97
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • DeepLocPro: Cell wall & surface
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.0809
    • Cell wall & surface Score: 0.8869
    • Extracellular Score: 0.0321
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.02362
    • TAT(Tat/SPI): 0.002145
    • LIPO(Sec/SPII): 0.001636
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACO21320 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MVAQDPKAQDSTKPTAEKSTVKAPAQRVDVKDITHLTDEEKVKVAILQANGSALDGATINVAGDGTATITFPDGSVVTILGKDTVQQSAKGESVTQEATPEYKLETTPGGDKGGNTGRSDANANAGGGSQAGGPVHTGSQNSAQSQASKQLATEKESAKNAIEKAAKNKQDEIKGAPLSDKEKAELLARVEAEKQAALKEIENAKTMEDVKEAETIGVQAIAMVAVPKRPVAPNAAPKTTSAPQATAGTMQDVTYQSPAGKQLPNTGSASSAALASLGLVVATSGFALLGRKTRRRK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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