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serotype 4
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serotype 19A
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serotype 6B
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Hu15
serotype 19A
Hu17
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INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
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OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
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SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
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serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 22-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae P1031
  • locus tag: SPP_RS03040 [old locus tag: SPP_0616 ]
  • pan locus tag?: PNEUPAN001496000
  • symbol: vex3
  • pan gene symbol?: vex3
  • synonym:
  • product: ABC transporter permease subunit Vex3

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPP_RS03040 [old locus tag: SPP_0616 ]
  • symbol: vex3
  • product: ABC transporter permease subunit Vex3
  • replicon: chromosome
  • strand: +
  • coordinates: 556070..557449
  • length: 1380
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGTTACACAACGCATTTGCCTATGTTACAAGGAAGTTTTTCAAATCGATTGTCATCTTC
    CTGATTATTCTCCTTATGGCGAGCTTGAGTTTGGTCGGCTTGTCAATCAAGGGAGCTACT
    GCCAAGGCTTCTCAGGAGACCTTTAAAAATATCACCAATAGCTTCTCCATGCAAATCAAT
    CGTCGCGTCAACCAAGGAACGCCTCGTGGTGCTGGGAATATCAAGGGTGAAGACATCAAA
    AAAATCACCGAAAACAAGGCCATTGAGTCTTATGTCAAACGTATCAACGCTATCGGAGAT
    TTGACTGGATATGACCTGATTGAAACGCCAGAAACCAAGAAGAATCTCACTGCTGATCGT
    GCCAAACGTTTTGGAAGTAGCTTGATGATTACAGGTGTCAATGACTCCTCTAAAGAAGAT
    AAGTTTGTCTCTGGTTCTTATAAACTAGTCGAAGGAGAGCACTTAACCAACGACGACAAG
    GATAAAATCCTCTTGCACAAGGACTTGGCAGCCAAACACGGCTGGAAAGTAGGGGACAAG
    GTTAAACTGGACTCTAATATCTACGATGCAGATAATGAAAAAGGAGCCAAGGAAACAGTT
    GAAGTGACAATCAAGGGACTCTTTGATGGTCATAATAAGTCAGCAGTAACCTACTCACAA
    GAACTTTACGAAAACACAGCTATTACAGACATTCACACTGCTGCAAAACTTTATGGATAC
    ACAGAAGACACAGCCATTTATGGGGACGCAACCTTCTTTGTAACAGCAGACAAGAACTTG
    GATGATGTTATGAAAGAGTTGAATGGCATCAGTGGTATCAACTGGAAGAGCTACACACTC
    GTCAAGAGCTCCTCTAACTACCCAGCTCTTGAGCAATCTATCTCTGGTATGTACAAGATG
    GCCAACCTCCTCTTCTGGGGTAGCTTGAGCTTCTCAGTCCTTCTCCTTGCCCTCTTGCTC
    AGTCTTTGGATCAATGCCCGTCGCAAGGAAGTGGGAATCCTCCTCTCTATTGGTCTCAAG
    CAGGCAAGTATCTTGGGTCAATTCATCACCGAATCTATCTTGATTGCTATCCCTGCTCTA
    GTTTCTGCTTACTTCCTAGCTAATTACACTGCCCATGCAATTGGAAACACTGTCCTTGCC
    AATGTGACTTCAGGTGTTGCCAAACAGGCTAGTAAGGCGGCTCAAGCCTCTAACCTTGGT
    GGCGGTGCAGAAGTAGATGGCTTTAGCAAGACCTTGTCGAGCCTAGACATTTCCATTCAG
    ACATCAGACTTTATCATCATTTTTGTCCTTGCCTTGGTTCTAGTGGTTCTCGTTATGGCG
    CTTGCTTCAAGCAATCTCCTTAGAAAACAACCAAAAGAGCTCTTGCTGGATGGTGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPP_RS03040 [old locus tag: SPP_0616 ]
  • symbol: Vex3
  • description: ABC transporter permease subunit Vex3
  • length: 459
  • theoretical pI: 9.12083
  • theoretical MW: 49965.1
  • GRAVY: 0.0544662

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, transmembrane protein, LolC/E family (TIGR02212; HMM-score: 22.4)
    acidobacterial duplicated orphan permease (TIGR03434; HMM-score: 18.9)
  • TheSEED: see SPP_0616
  • PFAM:
    BPD_transp_1 (CL0404) FtsX; FtsX-like permease family (PF02687; HMM-score: 105)
    and 1 more
    no clan defined CtnDOT_TraJ; Homologues of TraJ from Bacteroides conjugative transposon (PF07863; HMM-score: 14.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9901
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.0094
  • SignalP: Signal peptide SP(Sec/SPI) length 43 aa
    • SP(Sec/SPI): 0.745101
    • TAT(Tat/SPI): 0.093245
    • LIPO(Sec/SPII): 0.020718
    • Cleavage Site: CS pos: 43-44. AKA-SQ. Pr: 0.5185
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000902982 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MLHNAFAYVTRKFFKSIVIFLIILLMASLSLVGLSIKGATAKASQETFKNITNSFSMQINRRVNQGTPRGAGNIKGEDIKKITENKAIESYVKRINAIGDLTGYDLIETPETKKNLTADRAKRFGSSLMITGVNDSSKEDKFVSGSYKLVEGEHLTNDDKDKILLHKDLAAKHGWKVGDKVKLDSNIYDADNEKGAKETVEVTIKGLFDGHNKSAVTYSQELYENTAITDIHTAAKLYGYTEDTAIYGDATFFVTADKNLDDVMKELNGISGINWKSYTLVKSSSNYPALEQSISGMYKMANLLFWGSLSFSVLLLALLLSLWINARRKEVGILLSIGLKQASILGQFITESILIAIPALVSAYFLANYTAHAIGNTVLANVTSGVAKQASKAAQASNLGGGAEVDGFSKTLSSLDISIQTSDFIIIFVLALVLVVLVMALASSNLLRKQPKELLLDGE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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