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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 15-OCT-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae P1031
- locus tag: SPP_RS05050 [old locus tag: SPP_1021 ]
- pan locus tag?: PNEUPAN002100000
- symbol: dapA
- pan gene symbol?: dapA
- synonym:
- product: 4-hydroxy-tetrahydrodipicolinate synthase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPP_RS05050 [old locus tag: SPP_1021 ]
- symbol: dapA
- product: 4-hydroxy-tetrahydrodipicolinate synthase
- replicon: chromosome
- strand: +
- coordinates: 935703..936638
- length: 936
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_012467 (935703..936638) NCBI
- BioCyc: SPP_RS05050 BioCyc
- MicrobesOnline: see SPP_1021
- PneumoBrowse for strain D39V: SPV_0901 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901GTGTCTTATCAAGATTTAAAAGAATGTAAAATCATTACAGCCTTTATTACCCCCTTCCAT
GAGGATGGTTCCATTAACTTTGATGCTATTCCAGCCTTGATTGAGCATTTATTGGCCCAT
CATACGGATGGAATTCTTCTCGCAGGAACGACTGCTGAGAGTCCAACTTTGACCCACGAT
GAGGAGTTGGAGTTGTTTGCGGCTGTACAAAAGGTTGTCAATGGACGCGTTCCTTTGATT
GCGGGTGTAGGTACTAATGATACGCGTGACTCTATTGAGTTTGTCAAAGAAGTAGCGGAA
TTTGGTGGTTTCGCAGCTGGGCTTGCTATTGTTCCTTACTACAACAAACCTTCTCAAGAA
GGGATGTATCAGCACTTTAAGACTATTGCAGATGCTTCTGACCTACCAATTATTATCTAT
AACATTCCAGGGCGTGTAGTTGTCGAATTGACTCCAGAAACCATGCTTCGCTTGGCTGAC
CATCCAAATATTATCGGTGTCAAAGAATGTACTAGCTTGGCTAATATGGCTTACTTGATT
GAGCACAAGCCTGAAGAGTTCTTGATTTATACAGGTGAGGATGGAGATGCTTTCCATGCC
ATGAACCTTGGGGCGGATGGGGTTATTTCTGTTGCCTCTCATACAAATGGGGATGAAATG
CACGAGATGTTTACTGCCATTGCAGAAAGCGATATGAAGAAAGCCGCAGCAATTCAGCGT
AAATTCATTCCTAAGGTTAATGCTCTCTTCTCTTATCCAAGTCCTGCTCCAGTTAAGGCA
ATTCTTAACTATATGGGATTTGAAGCTGGACCCACTCGTCTACCTCTTGTTCCAGCACCA
GAAGAAGATGCCAAACGCATTATCAAGGTTGTCGTAGATGGCGACTACGAAGCAACTAAG
GCAACTGTAACAGGGGTCTTAAGACCAGATTACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPP_RS05050 [old locus tag: SPP_1021 ]
- symbol: DapA
- description: 4-hydroxy-tetrahydrodipicolinate synthase
- length: 311
- theoretical pI: 4.60706
- theoretical MW: 33913.5
- GRAVY: 0.0096463
⊟Function[edit | edit source]
- reaction: EC 4.3.3.7? ExPASy4-hydroxy-tetrahydrodipicolinate synthase Pyruvate + L-aspartate-4-semialdehyde = (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinate + H2O
- TIGRFAM: Amino acid biosynthesis Aspartate family 4-hydroxy-tetrahydrodipicolinate synthase (TIGR00674; EC 4.3.3.7; HMM-score: 302.5)and 4 more2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (TIGR02313; EC 4.1.2.-; HMM-score: 201.8)Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides N-acetylneuraminate lyase (TIGR00683; EC 4.1.3.3; HMM-score: 119.2)Central intermediary metabolism Amino sugars N-acetylneuraminate lyase (TIGR00683; EC 4.1.3.3; HMM-score: 119.2)5-dehydro-4-deoxyglucarate dehydratase (TIGR03249; EC 4.2.1.41; HMM-score: 92.2)
- TheSEED: see SPP_1021
- PFAM: TIM_barrel (CL0036) DHDPS; Dihydrodipicolinate synthetase family (PF00701; HMM-score: 279.3)and 1 morePeriplas_BP (CL0144) Peripla_BP_1; Periplasmic binding proteins and sugar binding domain of LacI family (PF00532; HMM-score: 14)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002855
- TAT(Tat/SPI): 0.000307
- LIPO(Sec/SPII): 0.000264
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSYQDLKECKIITAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKTIADASDLPIIIYNIPGRVVVELTPETMLRLADHPNIIGVKECTSLANMAYLIEHKPEEFLIYTGEDGDAFHAMNLGADGVISVASHTNGDEMHEMFTAIAESDMKKAAAIQRKFIPKVNALFSYPSPAPVKAILNYMGFEAGPTRLPLVPAPEEDAKRIIKVVVDGDYEATKATVTGVLRPDY
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: CodY see SPP_1021
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0901 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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