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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 22-NOV-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae P1031
  • locus tag: SPP_RS08400 [old locus tag: SPP_1704 ]
  • pan locus tag?: PNEUPAN003103000
  • symbol: nanB
  • pan gene symbol?: nanB
  • synonym:
  • product: neuraminidase NanB

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPP_RS08400 [old locus tag: SPP_1704 ]
  • symbol: nanB
  • product: neuraminidase NanB
  • replicon: chromosome
  • strand: -
  • coordinates: 1579549..1581642
  • length: 2094
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_012467 (1579549..1581642) NCBI
  • BioCyc: SPP_RS08400 BioCyc
  • MicrobesOnline: see SPP_1704
  • PneumoBrowse for strain D39V: SPV_1499 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    ATGAATAAAAGAGGTCTTTATTCAAAACTAGGAATTTCTGTTGTAGGCATTAGTCTTTTA
    ATGGGAGTTCCCACTTTGATTCATGCGAATGAATTAAACTATGGTCAACTGTCCATATCT
    CCTATTTTTCAAGGAGGTTCATATCAACTGAACAATAAGAGTATAGATATCAGCTCTTTG
    TTATTAGATAAATTGTCTGGAGAGAGTCAGACAGTAGTAATGAAATTTAAAGCAGATGAA
    CCAAACTCTCTTCAAGCTTTGTTTGGCCTATCTAATAGTAAAGCAGACTTTAAAAATAAT
    TACTTTTCAATTTTCATGAGAGATTCTGGTGAGATAGGTGTAGAAATAAGAGACGCCCAA
    AAGGGAATAAATTATTTATTTTCCAGACCAGCTTCATTATGGGGAAAACATAAAGGACAG
    GCAGTTGAAAATACACTAGTATTTGTATCTGATTCTAAAGATAAAACATACACAATGTAT
    GTTAATGGAATAGAAGTGTTCTCTGAAACAGTTGATACATTTTTGCCAATTTCAAATATA
    AATGGTATAGATAAGGCAACACTAGGAGCTGTTAATCGTGAAGGTAAGGAACATTACCTC
    GCAAAAGGAAGTATTGATGAAATCAGTCTATTTAACAAAGCAATTAGTGATCAGGAAGTT
    TCAACTATTCCCTTGTCAAATCCATTTCAGTTAATTTTCCAATCAGGAGATTCTACTCAA
    GCTAACTATTTTAGAATACCGACACTATATACATTAAGTAGTGGAAGAGTTCTATCAAGT
    ATTGATGCACGTTATGGTGGGACTCATGATTCTAAAAGTAAGATTAATATTGCCACTTCT
    TATAGTGATGATAATGGGAAAACGTGGAGTGAGCCAATTTTTGCTATGAAGTTTAATGAC
    TATGAGGAGCAGTTAGTTTACTGGCCACGAGATAATAAATTAAAGAATAGTCAAATTAGT
    GGAAGTGCTTCATTCATAGATTCATCCATTGTTGAAGATAAAAAATCTGGGAAAACGATA
    TTACTAGCTGATGTTATGCCTGCGGGTATTGGAAATAATAATGCAAATAAAGCCGACTCA
    GGTTTTAAAGAAATAAATGGTCATTATTATTTAAAACTAAAGAAGAATGGAGATAACGAT
    TTCCGTTATACAGTTAGAGAAAATGGTGTCGTTTATAATGAAACAACTAATAAACCTACA
    AATTATACTATAAATGATAAGTATGAAGTTTTGGAGGGAGGAAAGTCTTTAACAGTCGAA
    CAATATTCGGTTGATTTTGATAGTGGCTCTTTAAGAGAAAGGCATAATGGAAAACAGGTT
    CCTATGAATGTTTTCTACAAAGATTCGTTATTTAAAGTGACTCCTACTAATTATATAGCA
    ATGACAACTAGTCAGAATAGAGGAGAGAGTTGGGAACAATTTAAGTTGTTGCCTCCGTTC
    TTAGGAGAAAAACATAATGGAACTTACTTATGTCCCGGACAAGGTTTAGCATTAAAATCA
    AGTAACAGATTGATTTTTGCAACATATACTAGTGGAGAACTAACCTATCTCATTTCTGAT
    GATAGTGGTCAAACATGGAAGAAATCCTCAGCTTCAATTCCGTTTAAAAATGCAACAGCA
    GAAGCACAAATGGTTGAACTGAGAGATGGTGTGATTAGAACATTCTTTAGAACCACTACA
    GGTAAGATAGCTTATATGACTAGTAGAGATTCTGGAGAAACATGGTCGAAAGTTTCGTAT
    ATTGATGGAATCCAACAAACTTCATATGGCACACAAGTATCTGCAATTAAATACTCTCAA
    TTAATTGATGGAAAAGAAGCAGTCATTTTGAGTACACCAAATTCTAGAAGTGGCCGTAAG
    GGAGGTCAATTAGTTGTCGGTTTAGTCAATAAAGAAGATGATAGTATTGATTGGAAATAC
    CACTATGATATTGATTTGCCTTCGTATGGTTATGCCTATTCTGCGATTACAGAATTGCCA
    AATCATCACATAGGTGTACTGTTTGAAAAATATGATTCGTGGTCGAGAAATGAATTGCAT
    TTAAGCAATGTAGTTCAGTATATAGATTTGGAAATTAATGATTTAACAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2094

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPP_RS08400 [old locus tag: SPP_1704 ]
  • symbol: NanB
  • description: neuraminidase NanB
  • length: 697
  • theoretical pI: 6.60473
  • theoretical MW: 77753.5
  • GRAVY: -0.448207

⊟Function[edit | edit source]

  • reaction:
    EC 3.2.1.18?  ExPASy
    Exo-alpha-sialidase Hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)- glycosidic linkages of terminal sialic acid residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates
  • TIGRFAM:
  • TheSEED: see SPP_1704
  • PFAM:
    Concanavalin (CL0004) Sialidase; Sialidase, N-terminal domain (PF02973; HMM-score: 258.1)
    and 4 more
    Sialidase (CL0434) BNR_2; BNR repeat-like domain (PF13088; HMM-score: 75.2)
    Concanavalin (CL0004) Laminin_G_3; Concanavalin A-like lectin/glucanases superfamily (PF13385; HMM-score: 35.1)
    Sialidase (CL0434) BNR; BNR/Asp-box repeat (PF02012; HMM-score: 29.9)
    BNR_6; BNR-Asp box repeat (PF15899; HMM-score: 8.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 1.81
    • Extracellular Score: 8.19
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cell wall & surface Score: 0.0023
    • Extracellular Score: 0.9976
  • SignalP: Signal peptide SP(Sec/SPI) length 29 aa
    • SP(Sec/SPI): 0.989286
    • TAT(Tat/SPI): 0.005763
    • LIPO(Sec/SPII): 0.000994
    • Cleavage Site: CS pos: 29-30. IHA-NE. Pr: 0.9827
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001042163 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MNKRGLYSKLGISVVGISLLMGVPTLIHANELNYGQLSISPIFQGGSYQLNNKSIDISSLLLDKLSGESQTVVMKFKADEPNSLQALFGLSNSKADFKNNYFSIFMRDSGEIGVEIRDAQKGINYLFSRPASLWGKHKGQAVENTLVFVSDSKDKTYTMYVNGIEVFSETVDTFLPISNINGIDKATLGAVNREGKEHYLAKGSIDEISLFNKAISDQEVSTIPLSNPFQLIFQSGDSTQANYFRIPTLYTLSSGRVLSSIDARYGGTHDSKSKINIATSYSDDNGKTWSEPIFAMKFNDYEEQLVYWPRDNKLKNSQISGSASFIDSSIVEDKKSGKTILLADVMPAGIGNNNANKADSGFKEINGHYYLKLKKNGDNDFRYTVRENGVVYNETTNKPTNYTINDKYEVLEGGKSLTVEQYSVDFDSGSLRERHNGKQVPMNVFYKDSLFKVTPTNYIAMTTSQNRGESWEQFKLLPPFLGEKHNGTYLCPGQGLALKSSNRLIFATYTSGELTYLISDDSGQTWKKSSASIPFKNATAEAQMVELRDGVIRTFFRTTTGKIAYMTSRDSGETWSKVSYIDGIQQTSYGTQVSAIKYSQLIDGKEAVILSTPNSRSGRKGGQLVVGLVNKEDDSIDWKYHYDIDLPSYGYAYSAITELPNHHIGVLFEKYDSWSRNELHLSNVVQYIDLEINDLTK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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