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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 26-OCT-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae R6
- locus tag: SPR_RS07160 [old locus tag: spr1440 ]
- pan locus tag?: PNEUPAN002968000
- symbol: SPR_RS07160
- pan gene symbol?: cshA
- synonym:
- product: DEAD/DEAH box helicase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPR_RS07160 [old locus tag: spr1440 ]
- symbol: SPR_RS07160
- product: DEAD/DEAH box helicase
- replicon: chromosome
- strand: -
- coordinates: 1423788..1425362
- length: 1575
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_003098 (1423788..1425362) NCBI
- BioCyc: see spr1440
- MicrobesOnline: see spr1440
- PneumoBrowse for strain D39V: SPV_1413 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1561GTGAAATTTAATGAATTAAACTTGTCTGCTGATTTGCTAGCAGAAATTGAAAAAGCTGGT
TTTGTAGAAGCTAGTCCTATCCAAGAACAAACTATTCCTTTGGCCCTTGAAGGCAAGGAT
GTTATCGGTCAAGCTCAGACTGGTACAGGAAAAACTGCAGCCTTTGGCTTGCCTACCCTT
GAAAAAATCCGTACAGAAGAAGCGACTATCCAAGCTTTGGTCATCGCTCCAACTCGTGAA
CTAGCTGTCCAAAGTCAAGAAGAACTCTTCCGCTTTGGTCGTAGTAAGGGAGTCAAAGTC
CGTTCAGTATATGGCGGATCAAGCATTGAAAAACAAATTAAGGCTCTTAAATCTGGTGCC
CATATCGTGGTGGGAACTCCAGGTCGCCTCTTGGACTTGATTAAACGCAAGGCCTTGAAA
TTACAAGACATTGAAACCCTTATCCTTGACGAAGCGGATGAAATGCTTAACATGGGCTTC
CTTGAAGACATCGAAGCCATTATTTCCCGTGTACCTGAGAACCGTCAAACTTTGCTTTTC
TCAGCAACTATGCCAGATGCCATCAAACGTATCGGTGTTCAGTTTATGAAAGCCCCTGAA
CATGTCAAGATTGCGGCTAAGGAATTGACAACAGAATTGGTTGACCAGTACTATATCCGT
GTTAAGGAACAAGAAAAATTTGACACCATGACTCGTCTCATGGATGTGGCACAACCAGAA
CTCGCTATTGTATTTGGTCGTACCAAACGCCGTGTGGATGAATTGACTCGTGGTTTGAAA
ATTCGTGGCTTCCGTGCAGAAGGAATTCATGGCGACCTAGACCAAAACAAACGTCTTCGT
GTCCTTCGTGACTTTAAAAATGGCAATCTTGATGTTTTGGTTGCGACAGACGTTGCAGCG
CGTGGTTTGGATATTTCAGGTGTGACCCATGTCTACAACTACGATATTCCACAAGATCCT
GAGAGTTATGTTCACCGTATCGGTCGTACAGGTCGTGCTGGTAAGTCAGGTCAATCTATT
ACTTTTGTTGCTCCAAACGAAATGGGTTACCTTCAAATCATTGAAAACTTGACTAAGAAA
CGCATGAAAGGTCTCAAACCTGCAAGTGTAGAAGAATCCTTCCAATCAAAAAAACAGGTA
GCTCTCAAGAAAATCGAACGTGATTTTGCAGATGAAACCATTCGTGCCAACTTTGAGAAA
TTTGGTAAGGATGCTCGCAAATTGGCTGCTGAGTTTACTCCAGAAGAATTGGCAATGTAT
ATCTTGAGTCTGACAGTCCAAGACCCAGATAGCCTTCCAGAAGTGGAGATTGCACGTGAA
AAACCACTACCGTTTAAACCATCAGGTAATGGTTTCGGTGGTAAAGCTAAGGGAGGTCGT
GGAGGCCGTCGTGGGGACGACCGTCGAGAGCGTGATCGCCGTGGCAATGGTCGCCGTGAT
GAGTTCAAAAAAGGAAGTCGTGGCAACGATCGTTTTGATAAGGAAAAACGTTACCGTAAG
GATAATAAAAAACCACGCAATACTTTAAGCGAAAAGCAAACAGGCTTTGTTATTCGTAAC
AAAGGCGATAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPR_RS07160 [old locus tag: spr1440 ]
- symbol: SPR_RS07160
- description: DEAD/DEAH box helicase
- length: 524
- theoretical pI: 10.2388
- theoretical MW: 58827
- GRAVY: -0.597901
⊟Function[edit | edit source]
- ⊞TIGRFAM: DNA metabolism DNA replication, recombination, and repair ATP-dependent DNA helicase RecQ (TIGR01389; EC 3.6.4.12; HMM-score: 82.7)DNA metabolism DNA replication, recombination, and repair ATP-dependent DNA helicase, RecQ family (TIGR00614; EC 3.6.4.12; HMM-score: 72.7)DEXH box helicase, DNA ligase-associated (TIGR04121; EC 3.6.4.-; HMM-score: 66.8)and 8 more
- TheSEED: see spr1440
- ⊞PFAM: P-loop_NTPase (CL0023) DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 176.7)and 7 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFGKDARKLAAEFTPEELAMYILSLTVQDPDSLPEVEIAREKPLPFKPSGNGFGGKAKGGRGGRRGDDRRERDRRGNGRRDEFKKGSRGNDRFDKEKRYRKDNKKPRNTLSEKQTGFVIRNKGDK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1413 PneumoExpress