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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Taiwan19F-14
- locus tag: SPT_0272 [new locus tag: SPT_RS01370 ]
- pan locus tag?: PNEUPAN000976000
- symbol: rplR
- pan gene symbol?: rplR
- synonym:
- product: ribosomal protein L18
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPT_0272 [new locus tag: SPT_RS01370 ]
- symbol: rplR
- product: ribosomal protein L18
- replicon: chromosome
- strand: +
- coordinates: 235729..236085
- length: 357
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000921 (235729..236085) NCBI
- BioCyc: see SPT_RS01370
- MicrobesOnline: 7474026 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0209 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301GTGATTTCAAAACCAGATAAAAACAAACTCCGCCAAAAACGCCACCGTCGCGTTCGCGGA
AAACTCTCTGGAACTGCTGATCGCCCACGTTTGAACGTATTCCGTTCTAATACAGGCATC
TACGCTCAAGTGATTGATGACGTAGCGGGTGTAACGCTCGCAAGTGCTTCAACTCTTGAT
AAAGAAGTTTCAAAAGGAACTAAAACTGAACAAGCCGTTGCTGTCGGTAAACTCGTTGCA
GAACGTGCAAACGCTAAAGGTATTTCAGAAGTGGTGTTCGACCGCGGTGGATATCTATAT
CACGGACGTGTGAAAGCTTTGGCTGATGCAGCTCGTGAAAACGGATTGAAATTCTAA60
120
180
240
300
357
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPT_0272 [new locus tag: SPT_RS01370 ]
- symbol: RplR
- description: ribosomal protein L18
- length: 118
- theoretical pI: 11.0772
- theoretical MW: 12866.6
- GRAVY: -0.511864
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uL18 (TIGR00060; HMM-score: 152.6)
- TheSEED :
- LSU ribosomal protein L18p (L5e)
- PFAM: S11_L18p (CL0267) Ribosomal_L18p; Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (PF00861; HMM-score: 166.4)and 1 moreno clan defined DUF1069; Protein of unknown function (DUF1069) (PF06370; HMM-score: 12.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.67
- Cytoplasmic Membrane Score: 0.01
- Cellwall Score: 0.15
- Extracellular Score: 0.17
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.021848
- TAT(Tat/SPI): 0.004186
- LIPO(Sec/SPII): 0.003014
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MISKPDKNKLRQKRHRRVRGKLSGTADRPRLNVFRSNTGIYAQVIDDVAGVTLASASTLDKEVSKGTKTEQAVAVGKLVAERANAKGISEVVFDRGGYLYHGRVKALADAARENGLKF
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0209 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.