From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Taiwan19F-14
  • locus tag: SPT_1507 [new locus tag: SPT_RS07495 ]
  • pan locus tag?: PNEUPAN002951000
  • symbol: SPT_1507
  • pan gene symbol?: aldR
  • synonym:
  • product: endoribonuclease L-PSP, putative

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPT_1507 [new locus tag: SPT_RS07495 ]
  • symbol: SPT_1507
  • product: endoribonuclease L-PSP, putative
  • replicon: chromosome
  • strand: -
  • coordinates: 1438841..1439221
  • length: 381
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGGCAAAAACAATTCATACAGACAAAGCTCCAAAGGCTATCGGACCCTATGTTCAAGGA
    AAAATCGTTGGCAACCTTTTGTTTGCTAGCGGTCAAGTTCCCCTATCTCCTGAAACTGGG
    GAAATCGTTGGAGAAACGATCCAAGAACAGACAGAGCAAGTCTTGAAAAACATCGGTGCT
    ATTTTGGCAGAAGCAGGAACAGACTTTGACCATGTTGTCAAAACAACTTGCTTCTTGAGC
    GATATGAACGACTTTGTTCCTTTTAATGAGGTTTACCAAACGGCCTTCAAAGAGGAATTC
    CCAGCTCGTTCAGCTGTGGAGGTAGCTCGTCTTCCTCGTGATGTAAAAGTCGAAATTGAA
    GTCATCGCAGAGATTGGATAA
    60
    120
    180
    240
    300
    360
    381

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPT_1507 [new locus tag: SPT_RS07495 ]
  • symbol: SPT_1507
  • description: endoribonuclease L-PSP, putative
  • length: 126
  • theoretical pI: 4.38975
  • theoretical MW: 13718.5
  • GRAVY: -0.0126984

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Other reactive intermediate/imine deaminase (TIGR00004; HMM-score: 179.6)
    and 1 more
    pyrimidine utilization protein C (TIGR03610; HMM-score: 62.1)
  • TheSEED  :
    • RidA/YER057c/UK114 superfamily protein
    Prolyl-tRNA synthetase associated editing enzymes  RidA/YER057c/UK114 superfamily protein
    and 1 more
    RidA: all subgroups, 8100 genomes  RidA/YER057c/UK114 superfamily protein
  • PFAM:
    YjgF-like (CL0534) Ribonuc_L-PSP; Endoribonuclease L-PSP (PF01042; HMM-score: 147.4)
    and 3 more
    no clan defined MINDY-3_4_CD; Deubiquitinating enzyme MINDY-3/4, conserved domain (PF13898; HMM-score: 16.8)
    YjgF-like (CL0534) YjgF_endoribonc; YjgF/chorismate_mutase-like, putative endoribonuclease (PF14588; HMM-score: 12.5)
    no clan defined AbrB_C; AbrB C-terminal domain (PF18277; HMM-score: 12.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.015357
    • TAT(Tat/SPI): 0.001682
    • LIPO(Sec/SPII): 0.005414
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACO22282 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MAKTIHTDKAPKAIGPYVQGKIVGNLLFASGQVPLSPETGEIVGETIQEQTEQVLKNIGAILAEAGTDFDHVVKTTCFLSDMNDFVPFNEVYQTAFKEEFPARSAVEVARLPRDVKVEIEVIAEIG

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPT_1507&oldid=166311"