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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae Taiwan19F-14
  • locus tag: SPT_2172 [new locus tag: SPT_RS10755 ]
  • pan locus tag?: PNEUPAN003817000
  • symbol: SPT_2172
  • pan gene symbol?: fucL
  • synonym:
  • product: glycosyl hydrolase family 98 C- domain protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPT_2172 [new locus tag: SPT_RS10755 ]
  • symbol: SPT_2172
  • product: glycosyl hydrolase family 98 C- domain protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2024116..2027034
  • length: 2919
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    TTGAAGGGAGCATGGGAAGCTATTCCTGAAGATGTAAAACCATATGCAGCGATTGAACTT
    CATCCTGCAAAAGTCTGTAAACCAACAAGTTGTATTCCACGAGATACGAAAGAATTGAGA
    GAATGGTATGTCAAGATGTTGGAGGAAGCTCAAAGTCTAAACATTCCAGTTTTCTTGGTT
    ATTATGTCGGCTGGAGAGCGTAATACAGTTCCTCCAGAGTGGTTAGATGAACAATTCCAA
    AAGTATAGTGTGTTAAAAGGTGTTTTAAATATTGAGAATTATTGGATTTACAATAACCAG
    TTAGCTCCGCATAGTGCTAAATATTTGGAAGTTTGTGCCAAATATGGAGCGCATTTTATC
    TGGCATGATCATGAAAAATGGTTCTGGGAAACTATTATGAATGATCCGACATTCTTTGAA
    GCGAGTCAAAAATATCATAAAAATTTGGTGTTGGCAACTAAAAATACGCCAATAAGAGAT
    GATGCGGGTACAGATTCTATCGTTAGTGGATTTTGGTTGAGTGGCTTATGTGATAACTGG
    GGCTCATCAACAGATACATGGAAATGGTGGGAAAAACATTATACAAACACATTTGAAACT
    GGAAGAGCTAGGGATATGAGATCCTATGCATCGGAACCAGAATCAATGATTGCTATGGAA
    ATGATGAATGTATATACTGGGGGAGGCACAGTTTATAATTTCGAATGTGCCGCGTATACA
    TTTATGACAAATGATGTACCAACTCCAGCATTTACTAAAGGTATTATTCCTTTCTTTAGA
    CATGCTATACAAAATCCAGCTCCAAGTAAGGAAGAAGTTGTAAATAGAACAAAAGCTGTA
    TTTTGGAATGGAGAAGGTAGGATTAGTTCATTAAACGGATTTTATCAAGGACTTTATTCG
    AATGATGAAACAATGCCTTTATATAATAATGGGAGATATCATATTCTTCCTGTAATACAT
    GAGAAAATTGATAAGGAAAAGATTTCATCTATATTCCCTAATGCAAAAATTTTGACTAAA
    AATAGTGAGGAATTGTCTAGTAAAGTCAACTATTTAAACTCGCTTTATCCAAAACTTTAT
    GAAGGAGATGGGTATGCTCAGCGTGTAGGTAATTCCTGGTATATTTATAATAGTAATGCT
    AATATCAATAAAAATCAGCAAGTAATGTTGCCTATGTATACTAATAATACAAAGTCGTTA
    TCGTTAGATTTGACGCCACATACTTACGCTGTTGTTAAAGAAAATCCAAATAATTTACAT
    ATTTTATTGAACAATTACAGGACAGATAAGACAGCTATGTGGGCATTATCAGGAAATTTT
    GATGCATCAAAAAGTTGGAAGAAAGAAGAATTAGAGTTAGCGAACTGGATAAGCAAAAAT
    TATTCCATCAATCCTGTAGATAATGACTTTAGGACAACAACACTTACATTAAAAGGGCAT
    ACTGGTCATAAACCTCAGATAAATATAAGTGGCGATAAAAATCATTATACTTATACAGAA
    AATTGGGATGAGAATACCCATGTTTATACCATTACGGTTAATCATAATGGAATGGTAGAG
    ATGTCTATAAATACTGAAGGGACAGGCCCAGTCCCTTTCCCAACACCAGATAAATTTAAT
    GATGGTAATTTGAATATAGCATATGCAAAACCAACAACACAAAGTTCTGTAGATTACAAT
    GGAGACCCTAATAGAGCTGTGGATGGTAACAGAAATGGTAATTTTAACTCTGGTTCGGTA
    ACACACACTAGGGCAGATAATCCCTCTTGGTGGGAAGTCGATTTGAAAAAAATGGATAAA
    GTTGGGCTTGTTAAAATTTATAATCGCACAGATGCTGAGACTCAACGTCTATCTAATTTT
    GATGTGATTCTATATGACAATAATAGAAACGAAGTTGCTAAGAAACATGTTAATAATTTG
    TCGGGTGAATCTGTTAGTCTAGATTTCAAAGAAAAAGGAGCAAGGTATATTAAAGTTAAA
    TTACTAACGAGTGGAGTGCCTTTGAGTTTAGCAGAAGTAGAGGTTTTTAGAGAATCAGAT
    GGTAAGCAATCTGAAGAGGATATAGATAAAATAACAGAAGATAAAGTAGTCTCTACAAAT
    AAGGTAGCTACTCAAAGTTCAACCAATTATGAGGGTGTAGCTGCTTTAGCAGTTGATGGT
    AATAAAGATGGAGATTACGGACATCATTCGGTGACTCATACTAAGGCAGATTCTAACGCT
    TGGTGGCAGGTCGATCTGGGAGAAGAGTTTACGGTTTCTAAAGTTGATATTTATAATAGA
    ACAGATGCCGAACCTCAGCGTTTATCTAATTTTGATGTTATTTTTCTATCTTCATCAGGA
    GAAGAAGTTTTTAGAAGACATTTTGATAAAGTAGTTGATGGTTTGTTATCTTTAAAAGTA
    CCTTCTGTAGGGGCTAAGCTAGTCAAAATAGAATTAAAATCAGCAGCTATTCCGTTAAGT
    TTAGCGGAAGTTGAAGTCTATGGTTCAAAGAGAACTCCGAAGAAACTTTCTAATATTGCA
    TTAACCAAAGAAACTCGACAGAGTTCAACGGATTACAATGGTTTTTCTCGTCTAGCAGTT
    GATGGAAATAAAAACGGAGATTATGGTCATCATTCAGTGACTCATACCAAAGGAGATTCT
    CCTTCATGGTGGGAGATAGATTTAGCACAAACCGAAGAATTAGAAAAGTTAATTATTTAT
    AATAGAACAGATGCTGAAATTCAGAGATTATCAAATTTTGATATTATTATATATGATTCA
    AATAATCATGAAGTTTTTAAACAACATATTGACAGTTTAGAAAGCAATAATCTATCCATA
    GACTTAAAAGGGCTGAAGGGAAAAAAGGTTAGAATTTCTTTGAGAAACGCAGGAATTCCT
    TTAAGTTTGGCAGAGGTAGAGGTTTATACTTATAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2919

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPT_2172 [new locus tag: SPT_RS10755 ]
  • symbol: SPT_2172
  • description: glycosyl hydrolase family 98 C- domain protein
  • length: 972
  • theoretical pI: 6.227
  • theoretical MW: 110349
  • GRAVY: -0.60463

⊟Function[edit | edit source]

  • TIGRFAM:
    conserved hypothetical protein (TIGR03843; HMM-score: 12.3)
  • TheSEED  :
    • Thiol-activated cytolysin
    Phages, Prophages, Transposable elements, Plasmids Pathogenicity islands Listeria Pathogenicity Island LIPI-1 extended  Thiol-activated cytolysin
  • PFAM:
    no clan defined Glyco_hydro_98C; Glycosyl hydrolase family 98 C-terminal domain (PF08307; HMM-score: 430.5)
    and 2 more
    Glyco_hydro_98M; Glycosyl hydrolase family 98 (PF08306; HMM-score: 295.4)
    GBD (CL0202) F5_F8_type_C; F5/8 type C domain (PF00754; HMM-score: 118.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012736
    • TAT(Tat/SPI): 0.000631
    • LIPO(Sec/SPII): 0.005615
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACO22731 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKGAWEAIPEDVKPYAAIELHPAKVCKPTSCIPRDTKELREWYVKMLEEAQSLNIPVFLVIMSAGERNTVPPEWLDEQFQKYSVLKGVLNIENYWIYNNQLAPHSAKYLEVCAKYGAHFIWHDHEKWFWETIMNDPTFFEASQKYHKNLVLATKNTPIRDDAGTDSIVSGFWLSGLCDNWGSSTDTWKWWEKHYTNTFETGRARDMRSYASEPESMIAMEMMNVYTGGGTVYNFECAAYTFMTNDVPTPAFTKGIIPFFRHAIQNPAPSKEEVVNRTKAVFWNGEGRISSLNGFYQGLYSNDETMPLYNNGRYHILPVIHEKIDKEKISSIFPNAKILTKNSEELSSKVNYLNSLYPKLYEGDGYAQRVGNSWYIYNSNANINKNQQVMLPMYTNNTKSLSLDLTPHTYAVVKENPNNLHILLNNYRTDKTAMWALSGNFDASKSWKKEELELANWISKNYSINPVDNDFRTTTLTLKGHTGHKPQINISGDKNHYTYTENWDENTHVYTITVNHNGMVEMSINTEGTGPVPFPTPDKFNDGNLNIAYAKPTTQSSVDYNGDPNRAVDGNRNGNFNSGSVTHTRADNPSWWEVDLKKMDKVGLVKIYNRTDAETQRLSNFDVILYDNNRNEVAKKHVNNLSGESVSLDFKEKGARYIKVKLLTSGVPLSLAEVEVFRESDGKQSEEDIDKITEDKVVSTNKVATQSSTNYEGVAALAVDGNKDGDYGHHSVTHTKADSNAWWQVDLGEEFTVSKVDIYNRTDAEPQRLSNFDVIFLSSSGEEVFRRHFDKVVDGLLSLKVPSVGAKLVKIELKSAAIPLSLAEVEVYGSKRTPKKLSNIALTKETRQSSTDYNGFSRLAVDGNKNGDYGHHSVTHTKGDSPSWWEIDLAQTEELEKLIIYNRTDAEIQRLSNFDIIIYDSNNHEVFKQHIDSLESNNLSIDLKGLKGKKVRISLRNAGIPLSLAEVEVYTYK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulators: FucR* (repression) regulon, CcpA regulon
    FucR*(TF)important in Fucose utilization; RegPrecise    transcription unit transferred from TIGR4 data RegPrecise 
    CcpA(TF)important in Global catabolite repression; RegPrecise    transcription unit transferred from TIGR4 data RegPrecise 

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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