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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 06-SEP-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39V
- locus tag: SPV_0184 [new locus tag: SPV_RS01020 ]
- pan locus tag?: PNEUPAN000926000
- symbol: SPV_0184
- pan gene symbol?: —
- synonym:
- product: Hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPV_0184 [new locus tag: SPV_RS01020 ]
- symbol: SPV_0184
- product: Hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 187609..188040
- length: 432
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP027540 (187609..188040) NCBI
- BioCyc: SPV_0184 BioCyc
- MicrobesOnline:
- PneumoBrowse: SPV_0184 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
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241
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361
421ATGAAATTAAAAAGATTCACACTTTCTCTTGCTTCTCTAGCAAGTTTTAGTCTCTTAGTA
GCTTGTTCACAAAGAGCTCAACAGGTTCAACAGCCTGCTCAACAGAATACCAATACTGCA
AATGCAGGAGGTAACCAAAATCAAGCGGCTCCAGTACAAAACCAACCTGTTGCTCAACCG
ACCGATATTGATGGGACTTATACTGGTCAGGATGACGGAGACCGTATCACTTTAGTGGTA
ACTGGAACGACTGGTACATGGACTGAGCTCGAATCTGACGGGGATCAGAAAGTCAAACAG
GTTACATTTGATTCAGCAAATCAACGCATGATTATTGGCGATGATGTCAAAATTTACACT
GTAAACGGTAATCAAATCGTCGTAGATGATATGGATAGAGACCCATCGGACCAAATCGTT
TTAACTAAATAA60
120
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432
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPV_0184 [new locus tag: SPV_RS01020 ]
- symbol: SPV_0184
- description: Hypothetical protein
- length: 143
- theoretical pI: 4.21023
- theoretical MW: 15487
- GRAVY: -0.528671
⊟Function[edit | edit source]
- TIGRFAM: aromatic cluster surface protein (TIGR04313; HMM-score: 11.4)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: Calycin (CL0116) DUF3642; Bacterial lipoprotein (PF12182; HMM-score: 102.4)and 2 moreGlyoxalase (CL0104) Glyoxalase_8; Glyoxalase superfamily protein (PF20066; HMM-score: 15.2)no clan defined BioT2; Spermatogenesis family BioT2 (PF15368; HMM-score: 12.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0.24
- Cytoplasmic Membrane Score: 0.05
- Cellwall Score: 0.8
- Extracellular Score: 8.91
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0003
- Cytoplasmic Membrane Score: 0.4991
- Cell wall & surface Score: 0.0012
- Extracellular Score: 0.4994
- SignalP: Signal peptide LIPO(Sec/SPII) length 21 aa
- SP(Sec/SPI): 0.001919
- TAT(Tat/SPI): 0.000094
- LIPO(Sec/SPII): 0.997847
- Cleavage Site: CS pos: 21-22. LVA-CS. Pr: 0.9981
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: AVN85359 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKLKRFTLSLASLASFSLLVACSQRAQQVQQPAQQNTNTANAGGNQNQAAPVQNQPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESDGDQKVKQVTFDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLTK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress: SPV_0184 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.