From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 08-SEP-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39V
  • locus tag: SPV_RS06235 [old locus tag: SPV_1169 ]
  • pan locus tag?: PNEUPAN000130000
  • symbol: SPV_RS06235
  • pan gene symbol?: appB
  • synonym:
  • product: ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPV_RS06235 [old locus tag: SPV_1169 ]
  • symbol: SPV_RS06235
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 1197767..1198717
  • length: 951
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAAAAAATATATTCTAAAAAAAGTATTATTCATGATTCCTATGTTGTTGATTATTAGC
    TTTTTAGTATTCATTGCACTAGATTTAACACCAGCAGATCCATTGACATATATGGTATCT
    CCAGATATGGCTAGTAGTGCAGAACAAATCGAAAAGCTAAGACAGCAATTAGGTTTAAAT
    GATCCAGTATTAGTTCGCTATGGAAGATGGCTTTGGCAATTACTCCATGGTGATTTTGGA
    TACAGTATTGTAAATGGTAACCCAATTTCCAAAATTGTAGGACAAGCATTGCCTGCAACT
    TTTGAATTAGCTTTTGTGTCATTAATTATTTCAACAATTGTTGGTATTGTAATTGGGGTT
    ATATCAGCCGTTAAACAAAATGGTATTATCGATAATGTTGCTCGTTTTCTAGCTGTTATC
    GGAACTGCGATTCCACAATTTTTCTTTGGTATTTTAATTTTAAACTTCTTTGCAATTCAG
    TTAAGAATTTTACCTATTGGTGGTAGATTTGCCAGTGGAGATTTTACATTTATTAATAGA
    GTTGAACACTTAATTCTACCAGTAATGGCTATGTCAATTGCATTGGTAGCTGCTTTAATG
    AGATACACACGTAATTCTATGTTGGATGTTTTTAATGCAGATTATGTTAAAACAGCTCGT
    GCAAAAGGTGTTCCTGAATGGAAAGTTTATTTTAAACACATATTTAGAAATGCTATGCGA
    CCAATTTTAGTGTTATTGATTTTCCGTCTACCAATGTTAATTGGTGGATCAGTAATTATC
    GAGAGTGTCTTTTCTTGGCCTGGAATTGGTTCTATCATCCTATCTAGTGTAACAGCAGGT
    GACTATCCTGTAATTATGATTACCACATTAATGATTTCTGTCGTAGTGTTATTTGCTAGT
    CTACTTGTAGATATTATGGCTGCAATATTAGACCCACGTATTCGTTATTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    951

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPV_RS06235 [old locus tag: SPV_1169 ]
  • symbol: SPV_RS06235
  • description: ABC transporter permease
  • length: 316
  • theoretical pI: 10.1706
  • theoretical MW: 35110.1
  • GRAVY: 0.870253

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikB (TIGR02789; EC 3.6.3.24; HMM-score: 270.1)
    and 3 more
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 27.2)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 22.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 14.6)
  • TheSEED: data available for D39
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 145.6)
    and 1 more
    no clan defined BPD_transp_1_N; Binding-prot-dependent transport system membrane comp, N-term (PF19300; HMM-score: 44.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 1
    • Cell wall & surface Score: 0
    • Extracellular Score: 0
  • SignalP: Signal peptide SP(Sec/SPI) length 32 aa
    • SP(Sec/SPI): 0.73232
    • TAT(Tat/SPI): 0.001153
    • LIPO(Sec/SPII): 0.042795
    • Cleavage Site: CS pos: 32-33. TPA-DP. Pr: 0.4446
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000759970 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKYILKKVLFMIPMLLIISFLVFIALDLTPADPLTYMVSPDMASSAEQIEKLRQQLGLNDPVLVRYGRWLWQLLHGDFGYSIVNGNPISKIVGQALPATFELAFVSLIISTIVGIVIGVISAVKQNGIIDNVARFLAVIGTAIPQFFFGILILNFFAIQLRILPIGGRFASGDFTFINRVEHLILPVMAMSIALVAALMRYTRNSMLDVFNADYVKTARAKGVPEWKVYFKHIFRNAMRPILVLLIFRLPMLIGGSVIIESVFSWPGIGSIILSSVTAGDYPVIMITTLMISVVVLFASLLVDIMAAILDPRIRY

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPV_RS06235&oldid=67843"