Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 08-SEP-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39V
- locus tag: SPV_RS06370 [old locus tag: SPV_1193 ]
- pan locus tag?: PNEUPAN002633000
- symbol: msrB
- pan gene symbol?: msrAB1
- synonym:
- product: peptide-methionine (R)-S-oxide reductase MsrB
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPV_RS06370 [old locus tag: SPV_1193 ]
- symbol: msrB
- product: peptide-methionine (R)-S-oxide reductase MsrB
- replicon: chromosome
- strand: -
- coordinates: 1221600..1222538
- length: 939
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NZ_CP027540 (1221600..1222538) NCBI
- BioCyc: see SPV_1193
- MicrobesOnline:
- PneumoBrowse: SPV_1193 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901ATGGCAGAAATTTATCTAGCAGGTGGTTGTTTTTGGGGCCTAGAGGAATATTTTTCACGC
ATTTCTGGAGTGCTAGAAACCAGTGTTGGCTACGCTAATGGTCAAGTCGAAACGACCAAT
TACCAGTTGCTCAAGGAAACAGACCATGCAGAAACGGTCCAAGTGATTTACGATGAGAAG
GAAGTGTCACTCAGAGAGATTTTACTTTATTATTTCCGAGTTATCGATCCTCTATCTATC
AATCAACAAGGGAATGACCGTGGTCGCCAATATCGAACTGGGATTTATTATCAGGATGAA
GCAGATTTGCCAGCTATCTACACAGTGGTGCAGGAGCAGGAACGCATGCTGGGTCGAAAG
ATTGCAGTAGAAGTGGAGCAATTACGCCACTACATTCTGGCTGAAGACTACCACCAAGAC
TATCTCAGGAAGAATCCTTCAGGTTACTGTCATATCGATGTGACCGATGCTGATAAGCCA
TTGATTGATGCAGCAAACTATGAAAAGCCTAGTCAAGAGGTGTTGAAGGCCAGTCTATCT
GAAGAGTCTTATCGTGTCACACAAGAAGCTGCTACAGAGGCTCCATTTACCAATGCCTAT
GACCAAACCTTTGAAGAGGGGATTTATGTAGATATTACGACAGGTGAGCCACTCTTTTTT
GCCAAGGATAAGTTTGCTTCAGGTTGTGGTTGGCCAAGTTTTAGCCGTCCGATTTCCAAA
GAGTTGATTCATTATTACAAGGATCTGAGCCATGGAATGGAGCGAATTGAAGTTCGTTCT
CGTTCAGGCAGTGCTCACTTGGGTCATGTTTTCACAGATGGACCGCGGGAGTTAGGCGGC
CTCCGTTACTGTATCAATTCTGCTTCTTTACGCTTTGTGGCCAAGGATGAGATGGAAAAA
GCAGGATATGGCTATCTATTGCCTTACTTAAACAAATAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
939
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPV_RS06370 [old locus tag: SPV_1193 ]
- symbol: MsrB
- description: peptide-methionine (R)-S-oxide reductase MsrB
- length: 312
- theoretical pI: 4.67852
- theoretical MW: 35702.6
- GRAVY: -0.492308
⊟Function[edit | edit source]
- reaction: EC 1.8.4.12? ExPASyPeptide-methionine (R)-S-oxide reductase Peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (R)-S-oxide + thioredoxin
- TIGRFAM: Cellular processes Adaptations to atypical conditions methionine-R-sulfoxide reductase (TIGR00357; EC 1.8.4.-; HMM-score: 202.8)Protein fate Protein modification and repair methionine-R-sulfoxide reductase (TIGR00357; EC 1.8.4.-; HMM-score: 202.8)and 2 moreCellular processes Adaptations to atypical conditions peptide-methionine (S)-S-oxide reductase (TIGR00401; EC 1.8.4.11; HMM-score: 158.7)Protein fate Protein modification and repair peptide-methionine (S)-S-oxide reductase (TIGR00401; EC 1.8.4.11; HMM-score: 158.7)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: no clan defined PMSR; Peptide methionine sulfoxide reductase (PF01625; HMM-score: 187.1)Beta-tent (CL0080) SelR; SelR domain (PF01641; HMM-score: 153.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9903
- Cytoplasmic Membrane Score: 0.0025
- Cell wall & surface Score: 0.0008
- Extracellular Score: 0.0064
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.011536
- TAT(Tat/SPI): 0.001187
- LIPO(Sec/SPII): 0.002309
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000818207 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MAEIYLAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGRKIAVEVEQLRHYILAEDYHQDYLRKNPSGYCHIDVTDADKPLIDAANYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPISKELIHYYKDLSHGMERIEVRSRSGSAHLGHVFTDGPRELGGLRYCINSASLRFVAKDEMEKAGYGYLLPYLNK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress: SPV_1193 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]