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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_0356 [new locus tag: SP_RS01740 ]
  • pan locus tag?: PNEUPAN001162000
  • symbol: SP_0356
  • pan gene symbol?: rfbX
  • synonym:
  • product: putative polysaccharide transporter

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_0356 [new locus tag: SP_RS01740 ]
  • symbol: SP_0356
  • product: putative polysaccharide transporter
  • replicon: chromosome
  • strand: +
  • coordinates: 330528..331769
  • length: 1242
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AE005672 (330528..331769) NCBI
  • BioCyc:
  • MicrobesOnline: 115888 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    GTGAAAGTTGATAGAATTTCATTTATAAAAAATACAAGTTCTCTCTATATTCTGAATATT
    GTTAAATTACTATTTCCTTTATTAACACTCCCGTATTTGACAAGGGTGCTTTCGCTAGAC
    GCGTATGGAATGGTTATTTATGTTAAAGCGTTAATAGCTTATGTTCAACTGGTGATTGAT
    TTTGGTTTCATGATATCAGCTACAAAAAATATTGTAAATGCTTGTACTACTCCCTCAAAG
    ATTGGAAGGATAGTTGGAGATACTCTAGTTGAAAAAATATTTTTATCTATCATTTCGATT
    CTAATTTACACCATATTGATGTGGCAAATCCCAATAATGAGAGAGAATATTCTTTTTTCA
    GTTTTTTATTTGTTAGCTACAGTGACCAATATTTTTATCTTTGACTTTTTATTTCGTGGA
    ATTGAAAAGATGCATGCAGTTGCAATTCCTTATATTATTTCTAAAACTATCATTACAATT
    TTGACATTTATTGTAGTAAAAGATGATTCTTCTATTTTATGGATTCCTATATTGGAAGGA
    ATTGGGAATTTAGTTGCTGCAGTAGTTTCTTATAGATTCCTTCATTATTATGGAATTAAA
    TTATCATTTTCTTATCTGTCTGTTTGGGTTAAAGATTTAAAGGAATCCTCTATTTATTTT
    TTATCCAATTTTGCAACTACTATTTTTGGCGTCTTTACGACAGTCATTTCGGGTTTTTAT
    TTACAAAGTCAAGAGATAGCCTTTTGGGGGATAGCAATGCAACTGCTTTCAGCAGCAAAA
    TCATTGTATAATCCTATAGCGAATAGTTTATATCCGCATATGATACGTACTAAAGATATA
    CAATCGGTTAAGAGTATTAATCGGATTATGTTTATTCCTATTATCTTTGGAGTTTTGATA
    GTTTTATTCTTTTCAAATCAAATTCTTTCTATAATTGGTGGTGAAAAATATACCGTTTCA
    GCAGATTTTCTTAAGTACTTATTACCCGCTTTTGTTGCTAGTTTTTATTCTATGATTTAC
    GGATGGCCTGTCTTAGGAGCTATTGATAAAGTGAAAGAAACTACAATGACAACTATATTA
    GCTTCGATTGTCCAAACTTTGGGATTAGGAATATTTATCTTGTCTGATAATTTTAGTTTA
    GTAACATTAGCTATTTGTTCAAGTATGTCTGAGGTGGTGTTATGGATTAGCCGTTATCTA
    ATTTATTTTAAGAACCGTTCATTATTTGTTAGGAGTAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1242

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_0356 [new locus tag: SP_RS01740 ]
  • symbol: SP_0356
  • description: putative polysaccharide transporter
  • length: 413
  • theoretical pI: 9.78659
  • theoretical MW: 46783.7
  • GRAVY: 0.866344

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids
    Cell Wall and Capsule Gram-Positive cell wall components Teichoic and lipoteichoic acids biosynthesis  Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids
  • PFAM:
    MviN_MATE (CL0222) Polysacc_synt; Polysaccharide biosynthesis protein (PF01943; HMM-score: 87.3)
    and 1 more
    SLATT (CL0676) SLATT_fungal; SMODS and SLOG-associating 2TM effector domain (PF18142; HMM-score: 11.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9997
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0003
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.055951
    • TAT(Tat/SPI): 0.002445
    • LIPO(Sec/SPII): 0.001955
  • predicted transmembrane helices (TMHMM): 12

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKVDRISFIKNTSSLYILNIVKLLFPLLTLPYLTRVLSLDAYGMVIYVKALIAYVQLVIDFGFMISATKNIVNACTTPSKIGRIVGDTLVEKIFLSIISILIYTILMWQIPIMRENILFSVFYLLATVTNIFIFDFLFRGIEKMHAVAIPYIISKTIITILTFIVVKDDSSILWIPILEGIGNLVAAVVSYRFLHYYGIKLSFSYLSVWVKDLKESSIYFLSNFATTIFGVFTTVISGFYLQSQEIAFWGIAMQLLSAAKSLYNPIANSLYPHMIRTKDIQSVKSINRIMFIPIIFGVLIVLFFSNQILSIIGGEKYTVSADFLKYLLPAFVASFYSMIYGWPVLGAIDKVKETTMTTILASIVQTLGLGIFILSDNFSLVTLAICSSMSEVVLWISRYLIYFKNRSLFVRSK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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