Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TIGR4
- locus tag: SP_0391 [new locus tag: SP_RS01930 ]
- pan locus tag?: PNEUPAN001233000
- symbol: cbpF
- pan gene symbol?: cbpK
- synonym:
- product: choline binding protein F
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP_0391 [new locus tag: SP_RS01930 ]
- symbol: cbpF
- product: choline binding protein F
- replicon: chromosome
- strand: +
- coordinates: 369611..370633
- length: 1023
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AE005672 (369611..370633) NCBI
- BioCyc:
- MicrobesOnline: 115916 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0357 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021ATGAAGCTTTTGAAAAAAATGATGCAAATCGCACTAGCCACATTTTTCTTCGGTTTGTTA
GCGACAAATACAGTATTTGCAGATGATTCTGAAGGATGGCAGTTTGTCCAAGAAAATGGT
AGAACCTACTACAAAAAGGGGGATCTAAAAGAAACCTACTGGAGAGTGATAGATGGGAAG
TACTATTATTTTGATCCTTTATCCGGAGAGATGGTTGTCGGCTGGCAATATATACCTGCT
CCACACAAGGGGGTTACGATTGGTCCTTCTCCAAGAATAGAGATTGCTCTTAGACCAGAT
TGGTTTTATTTTGGTCAAGATGGTGTATTACAAGAATTTGTTGGCAAGCAAGTTTTAGAA
GCAAAAACTGCTACGAATACCAACAAACATCATGGGGAAGAATATGATAGCCAAGCAGAG
AAACGAGTCTATTATTTTGAAGATCAGCGTAGTTATCATACTTTAAAAACTGGTTGGATT
TATGAAGAGGGTCATTGGTATTATTTACAGAAGGATGGTGGCTTTGATTCGCGCATCAAC
AGATTGACGGTTGGAGAGCTAGCACGTGGTTGGGTTAAGGATTACCCTCTTACGTATGAT
GAAGAGAAGCTAAAAGCAGCTCCATGGTACTATCTAAATCCAGCAACTGGCATTATGCAA
ACAGGTTGGCAATATCTAGGTAATAGATGGTACTACCTCCATTCGTCAGGAGCTATGGCA
ACTGGCTGGTATAAGGAAGGCTCAACTTGGTACTATCTAGATGCTGAAAATGGTGATATG
AGAACTGGCTGGCAAAACCTTGGGAACAAATGGTACTATCTCCGTTCATCAGGAGCTATG
GCAACTGGTTGGTATCAGGAAAGTTCGACTTGGTACTATCTAAATGCAAGTAATGGAGAT
ATGAAAACAGGCTGGTTCCAAGTCAATGGTAACTGGTACTATGCCTATGATTCAGGTGCT
TTAGCTGTTAATACCACAGTAGGTGGTTACTACTTAAACTATAATGGTGAATGGGTTAAG
TAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1023
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP_0391 [new locus tag: SP_RS01930 ]
- symbol: CbpF
- description: choline binding protein F
- length: 340
- theoretical pI: 6.2631
- theoretical MW: 39780.1
- GRAVY: -0.661176
⊟Function[edit | edit source]
- TIGRFAM: glucan-binding repeat (TIGR04035; HMM-score: 30.2)
- TheSEED :
- Choline binding protein J
- PFAM: Choline_binding (CL0694) Choline_bind_3; Choline-binding repeat (PF19127; HMM-score: 112.7)Choline_bind_1; Putative cell wall binding repeat (PF01473; HMM-score: 94.1)and 2 moreCholine_bind_2; Choline-binding repeat (PF19085; HMM-score: 21.8)no clan defined DUF5522; Family of unknown function (DUF5522) (PF17653; HMM-score: 8.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 9.97
- Cellwall Score: 0.01
- Extracellular Score: 0.01
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.0077
- Cell wall & surface Score: 0.2479
- Extracellular Score: 0.7443
- SignalP: Signal peptide SP(Sec/SPI) length 27 aa
- SP(Sec/SPI): 0.998204
- TAT(Tat/SPI): 0.00069
- LIPO(Sec/SPII): 0.000605
- Cleavage Site: CS pos: 27-28. VFA-DD. Pr: 0.9936
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKLLKKMMQIALATFFFGLLATNTVFADDSEGWQFVQENGRTYYKKGDLKETYWRVIDGKYYYFDPLSGEMVVGWQYIPAPHKGVTIGPSPRIEIALRPDWFYFGQDGVLQEFVGKQVLEAKTATNTNKHHGEEYDSQAEKRVYYFEDQRSYHTLKTGWIYEEGHWYYLQKDGGFDSRINRLTVGELARGWVKDYPLTYDEEKLKAAPWYYLNPATGIMQTGWQYLGNRWYYLHSSGAMATGWYKEGSTWYYLDAENGDMRTGWQNLGNKWYYLRSSGAMATGWYQESSTWYYLNASNGDMKTGWFQVNGNWYYAYDSGALAVNTTVGGYYLNYNGEWVK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SP_0389 > cbpG > cbpF
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0357 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ 1.0 1.1 Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M Meyer, Tim van Opijnen
The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.
PLoS Pathog: 2018, 14(12);e1007461
[PubMed:30517198] [WorldCat.org] [DOI] (I e)
⊟Relevant publications[edit | edit source]
Rafael Molina, Ana González, Meike Stelter, Inmaculada Pérez-Dorado, Richard Kahn, María Morales, Miriam Moscoso, Susana Campuzano, Nuria E Campillo, Shahriar Mobashery, José L García, Pedro García, Juan A Hermoso
Crystal structure of CbpF, a bifunctional choline-binding protein and autolysis regulator from Streptococcus pneumoniae.
EMBO Rep: 2009, 10(3);246-51
[PubMed:19165143] [WorldCat.org] [DOI] (I p)