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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 31-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae TIGR4
  • locus tag: SP_0505 [new locus tag: SP_RS02480 ]
  • pan locus tag?: PNEUPAN000086000
  • symbol: SP_0505
  • pan gene symbol?: hsdS_1
  • synonym:
  • product: putative type I restriction-modification system, S subunit

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP_0505 [new locus tag: SP_RS02480 ]
  • symbol: SP_0505
  • product: putative type I restriction-modification system, S subunit
  • replicon: chromosome
  • strand: +
  • coordinates: 486054..487334
  • length: 1281
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AE005672 (486054..487334) NCBI
  • BioCyc:
  • MicrobesOnline: 116022 MicrobesOnline
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    GTGAGGATAAAATCAATTTATTGGAATTTTGGGCAAAATAAGCCAGAGAAATCCTTTAGG
    TATATAGATACGTCTAGTATTGATAGAAAAAAGAACATAATCAACTACAAAAATCTACAA
    TATCTTTCACCTGAACAAGCGCCTTCCCGTGCTAGAAAATTAGTTTCGCAGAATAGTGTC
    TTATTTTCAACAGTTAGACCATATCTAAAAAATATTGCTGTAGTTAGAGAACTTAAAGAG
    TATTTGATAGCTAGTACAGCATTTATTGTTTTGGATACTTTACTTAACGAAACATATTTG
    AAATATTATTTATTATCAGATAATTTTATCAATCGTGTTAATAATAAATCTACTGGAACA
    AGTTATCCTGCAATCAATGATTATAATTTTAATCTATTATTAATTGCTCTCCCCCCACTA
    TCCGAACAACAACGAATAGTAGAAGCAATCGAATCAGCTTTAGAAAAAGTAGATGAATAT
    GCTGAAAGTTATAATAGACTAGAACAGCTAGATAAAGAATTTCCAGATAAACTAAAAAAA
    TCTATTCTTCAATATGCTATGCAAGGAAAATTAGTTGAACAAGACCCAAATGATGAATCA
    GTCGAAGTTTTACTTGAAAAAATACGAGCAGAAAAACAAAAACTCTTTGAAGAAGGCAAG
    ATTAAAAAGAAAGATTTGGACATTTCTATTGTTTCCCAAGGAGATGATAACTCTTATTAT
    GAGGAAGTACCTTGTGAAATACCAGAAAGTTGGGAATGGGTGAGGTTAAACGATATAACC
    TCCTACATTCAAAGAGGGAAGTCTCCAAAATATTCAAATATTCCTATATACCCTGTGATT
    GCTCAGAAATGTAATCAATGGTCTGGCTTTTCTATTGACTTAGCAAGATTTATTGATCCC
    GAAACAGTTCATAGTTACCAGAAAGAAAGATTACTAAGAGATGGTGATTTAATGTGGAAT
    TCAACAGGTCTAGGTACGTTAGGACGATTAGCTATTTACCATGAAAATAAAAATCCTTAT
    GGCTGGGCTGTTGCAGATAGCCATGTTACAGTTATAAGAGTCTTATCGGGGGTTATTAAT
    TGCCATTTCATCTATAATTTTCTTTCCTCTCCTATTGTTCAGTCAGTTATTGAAGAAAAA
    GCGTCGGGTAGTACAAAACAAAAAGAATTATTAACGAAAACTATAAAAGAATATTTAATC
    CCCCTCCCACCCCTTCCTGAACAATCCAGAATCGTTGATAAAATCGAACAATTTTTCGCC
    CATATTGACGCACTAATTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1281

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP_0505 [new locus tag: SP_RS02480 ]
  • symbol: SP_0505
  • description: putative type I restriction-modification system, S subunit
  • length: 426
  • theoretical pI: 6.69479
  • theoretical MW: 49273.9
  • GRAVY: -0.410329

⊟Function[edit | edit source]

  • TIGRFAM:
    putative Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C (TIGR01827; HMM-score: 15)
  • TheSEED  :
    • Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)
    DNA Metabolism DNA Metabolism - no subcategory Restriction-Modification System  Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)
    and 1 more
    DNA Metabolism DNA Metabolism - no subcategory Type I Restriction-Modification  Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)
  • PFAM:
    TRD (CL0477) Methylase_S; Type I restriction modification DNA specificity domain (PF01420; HMM-score: 93.8)
    and 1 more
    no clan defined DUF6291; Family of unknown function (DUF6291) (PF19808; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9391
    • Cytoplasmic Membrane Score: 0.0265
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.034
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012758
    • TAT(Tat/SPI): 0.000324
    • LIPO(Sec/SPII): 0.001612
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRIKSIYWNFGQNKPEKSFRYIDTSSIDRKKNIINYKNLQYLSPEQAPSRARKLVSQNSVLFSTVRPYLKNIAVVRELKEYLIASTAFIVLDTLLNETYLKYYLLSDNFINRVNNKSTGTSYPAINDYNFNLLLIALPPLSEQQRIVEAIESALEKVDEYAESYNRLEQLDKEFPDKLKKSILQYAMQGKLVEQDPNDESVEVLLEKIRAEKQKLFEEGKIKKKDLDISIVSQGDDNSYYEEVPCEIPESWEWVRLNDITSYIQRGKSPKYSNIPIYPVIAQKCNQWSGFSIDLARFIDPETVHSYQKERLLRDGDLMWNSTGLGTLGRLAIYHENKNPYGWAVADSHVTVIRVLSGVINCHFIYNFLSSPIVQSVIEEKASGSTKQKELLTKTIKEYLIPLPPLPEQSRIVDKIEQFFAHIDALI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ 1.0 1.1 Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M Meyer, Tim van Opijnen
    The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence.
    PLoS Pathog: 2018, 14(12);e1007461
    [PubMed:30517198] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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